Edem001403.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000023.1:59605-62937[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0014 0.14 14.1 1.7 1 23 36 59 36 59 0.97 2 12 0.0023 0.23 13.5 3.9 3 23 66 86 65 86 0.98 3 12 0.0012 0.12 14.3 5.1 2 23 100 122 99 122 0.94 4 12 0.0015 0.15 14.0 0.3 3 23 131 152 129 152 0.95 5 12 2e-06 0.0002 23.1 2.1 2 23 158 180 158 180 0.96 6 12 0.082 8 8.6 8.1 2 23 188 210 187 210 0.97 7 12 0.0014 0.13 14.2 3.4 1 23 216 238 216 238 0.98 8 12 0.00023 0.022 16.7 0.6 1 23 244 267 244 267 0.96 9 12 0.71 69 5.7 0.9 2 14 282 294 281 295 0.89 10 12 1.4e-05 0.0014 20.5 3.8 1 23 334 356 334 356 0.98 11 12 0.00028 0.027 16.4 0.2 2 23 363 385 362 385 0.96 12 12 0.3 29 6.8 0.9 2 21 1078 1097 1077 1098 0.92
Sequence Information
- Coding Sequence
- ATGACGCTAGTTCACCCAGCCGAAGATATATCCTTAAGTCCTGCACTGCATCGAGAACCAAACACGATTCTCCAGCCACTTAGGCAACTGGTTCCCCATGGAACGTATAGTTGCCCAGAATGCAAGCATTCTTCTCCAACAATGGACTCCTTTAAGAAGCACATGCAGAATGCCCACCCTAAGCCTCAAGCGGCTTGTAAATCATGCCATAAAGTTTACAGAACCGTCAAAAGCTTGAGGAGACATGAGAAGACTCATATGGAGAAAGTTGTGAAACAGCACAAAGTCGGAGATTTACCGTGTTCACACTGCCATAAAAAGTTTAGTACCCAGACGGCATTACACTGGCATGTGGAGCGGAATCATATGGCGCAGCTAAAGACAAGTAATTGTCAGGTTTGTGGAAAAGAACTAGCGGATCATGCCAGTTTGAAACGGCATCTAGAAATGGTGCATTCGCTAGAGAGTGCCAGCTGCTCTATATGCAAAAAGACTTTTAAAAGCTTGACTAACTTGCAGAGGCATATGAACGTCACTCATCCCCCGGAAGACGCTGCACAGACTTGCCAAACATGTCACAAAACCTTCAAGTGCTCCTTGCACTTGCGAATACACATCCGGACTGTTCATGTACCGGAAACTGTCTTCAACTGTGATTTGTGCAATAAACAGTTTCCTTCAAAGAAGTACATGTTAAAACATAAAAAGACGCATGTTGATGTTAAAGCGTTCCCTTGCAGTATTTGTAGTAAAATGTTCAAAAGTTCCGAAGAAGCCAAAAAGCATGCAAAGCGAGTTCACATGAAGGAAGCTCCCGCTAAGAAAACTCCTGAAAAGACCAGTACCTGTGACATTTGTAATAAAGAGTTTCCCCACAAAAAAACCCATGTTGATGTTAAATCATACTCCTGCAATGTCTGCAGGAAATTATTCAAGTGTGAGAGCCATGTTAGAAAGCAAACAAAACGACTCGACACCGTAGAAGGAATGACATTTAGGTTTCATTGTGATGTATGCAAGAAATCgtttacttcaaagaaaaatATGGCGAAACATATTTTAACCCATTTCGCAACCAAAAACTTGCCTTGTGGCATTTgtgataaattatttaaatctaAAGGTGAAGTTAATAAGCATTTAAAACGAGTGCATATGAAGGGACTTGTCAGAAACAACAAGACAGAGACAATAACAGAAACAAATACAGTAAGTACAGCATACACAAACAATACAGAATACATCAGTGATGCTCTTAGAAATATAGAGTATACTGAGAAAGTTCTTGCGAATACTAAATATACAGTCAAAGCTCTAGAAATAACAGAGTACACAGATGAGATTCCTAGAAGTGAAGATTACCGATTAGAGGCTCTTGGAACCTCAGAATACGCATTAGAACTGCTGGGAAGCACTGAATACACATTGGAAACGCTTCAAAGTACAGAGCATGCAGGGGAAACCCTGGGCAATACAGATTTTATTGTTAGTACAGAGTCACAAGCTCCTGGAGATACAGAGCTCACAGAGCAAACCCTCGGAAATACAGAGTTTACACATACAACTAGTACAGAGTGTACAGCCAAAGCTCTTCAAAGTACAACGATTTTAGAGGCAGTTCATGGAAGTACGAACGGAGACTTTACAGTGAAACCACTCGGAAATACAGCTGTCACTGGGAAAGCCCTAAGAAGTACGGATATTCTAAAAGATGCTATTGATATATCCGATTTTACAATGGAAGATCTCGGGATTACAGAGGAAGCGGTAGAAAGTACAAAATCTGAAGCAGCCTTTGGATGTGCAGATATTATAGATACTCTCGGAAGTGTACAGTGCACACATCAAGTTCCTGTACATACAGAGTACACAGATAAAGTCCGTGGAGATACAGAATTCACTAAGAAAACTCTTAATGCTATAGCCATATCAGCTTTTACAATGGAAGACCTTGCAATAACTGAGGTAGCAGTAGGAAGTACCAAATCTAAAGCTCTCGATAGTACAACTTTAATAAAAACTCTCGAACGTATAGAGTGCGTAAAGGAAGTCACTAGAAAGAAAGCATCCGCAGGTATTCACGGTACAGTGTTAACAAAGAAAGCTCTTAGGCATACAGATATTATAAAGGAAGCCCTTGAAATTTCAGATTTCACTATGGAAGACCTTGAGATAACAGAATCCGATAAAGAAACCCTGGAAAACGAAATACCAATGAACACATTCGAATGCTCAGCAGCCACAGAGGCAATACTTGAAGATACTGACTTCATAGAATCACTCGAAAACACAGAGTTAACAGACAAAGCCCTTGGTAACACAAACATAATAAAGGAGGCGATCGATTCAGCTTTTACTATGAAAGACCTTGGAATTACAGAGATTGCAGAAGAAGCTGTTGGAAGTGTACCTAAGAAAATCCTCGTAATTACAAAGATCACTGACGAATCTCTTAGTTGTCGGAAGCTAGCCCTCGGAAGTTCAGTAATTGAAGTTGAAGCACCTGGTGAAACAGCAAATACCGATAGTAAACAGTTAAAAGAGAAAACTCTTGATAACccagaaattataaaaaacgcTATCGAAAGTTCGGATTTCTCAATAGAAGACCTCGGGCTTGAAGAATATACAGAGGATGCTCTTGACCCTACAGATTATACCATGGAAGATCTTGGAATCACAGAATATCCAGAAGCACTTGAAAGTACAGACTTTATACAAGAAGCCCTCTGTAGTACAGGTTTCACAAAGAAAACGGCTGGAGATATGGAGTTCCCGGAAGTCCATCAAAGTGCAGACTTTACAGACAGTAGCCTGGGATTCATAGAAGATGCCCTTGGAAATACAGAGTACGCGAAACCTACAATCAGTACTGCAGAATTCACAGAAAAAGAGTTCGAAAGTGCAGATTTCTTGGAAGAAGCTCTTAAAAGAACAGATTTCACCGAGGAAGCTCTTAGGAGTACAGAGTTAGAAGAACGACTTGTGAGTACAGAATTCAAAGAAGCTCTAGCAAGTACAGAGCGTTCTAAAGAAACTCCCGTTTCGACAGAACTTATAGATACAATAATCGAAAATGATATCATAAAAGAAGCTGTAGTATACTCAGATTTTGTTACGGATGACCTTGGCATTAAATACACAGAGGATGAGTTTCTAAATACCAATTTGTCTATGGATGAAATCAACACCACGGAATGCTCAGAAGCCCTAAGAAACATCGAGTTATTGAATTGCTTGAAATGTGGCATTGATTTTAAGAATGATGTTGATTTACACACTCATTTGTGCGGCGGAGAGATGACATTGTTTCTTGATTTTCAAGACATGTAG
- Protein Sequence
- MTLVHPAEDISLSPALHREPNTILQPLRQLVPHGTYSCPECKHSSPTMDSFKKHMQNAHPKPQAACKSCHKVYRTVKSLRRHEKTHMEKVVKQHKVGDLPCSHCHKKFSTQTALHWHVERNHMAQLKTSNCQVCGKELADHASLKRHLEMVHSLESASCSICKKTFKSLTNLQRHMNVTHPPEDAAQTCQTCHKTFKCSLHLRIHIRTVHVPETVFNCDLCNKQFPSKKYMLKHKKTHVDVKAFPCSICSKMFKSSEEAKKHAKRVHMKEAPAKKTPEKTSTCDICNKEFPHKKTHVDVKSYSCNVCRKLFKCESHVRKQTKRLDTVEGMTFRFHCDVCKKSFTSKKNMAKHILTHFATKNLPCGICDKLFKSKGEVNKHLKRVHMKGLVRNNKTETITETNTVSTAYTNNTEYISDALRNIEYTEKVLANTKYTVKALEITEYTDEIPRSEDYRLEALGTSEYALELLGSTEYTLETLQSTEHAGETLGNTDFIVSTESQAPGDTELTEQTLGNTEFTHTTSTECTAKALQSTTILEAVHGSTNGDFTVKPLGNTAVTGKALRSTDILKDAIDISDFTMEDLGITEEAVESTKSEAAFGCADIIDTLGSVQCTHQVPVHTEYTDKVRGDTEFTKKTLNAIAISAFTMEDLAITEVAVGSTKSKALDSTTLIKTLERIECVKEVTRKKASAGIHGTVLTKKALRHTDIIKEALEISDFTMEDLEITESDKETLENEIPMNTFECSAATEAILEDTDFIESLENTELTDKALGNTNIIKEAIDSAFTMKDLGITEIAEEAVGSVPKKILVITKITDESLSCRKLALGSSVIEVEAPGETANTDSKQLKEKTLDNPEIIKNAIESSDFSIEDLGLEEYTEDALDPTDYTMEDLGITEYPEALESTDFIQEALCSTGFTKKTAGDMEFPEVHQSADFTDSSLGFIEDALGNTEYAKPTISTAEFTEKEFESADFLEEALKRTDFTEEALRSTELEERLVSTEFKEALASTERSKETPVSTELIDTIIENDIIKEAVVYSDFVTDDLGIKYTEDEFLNTNLSMDEINTTECSEALRNIELLNCLKCGIDFKNDVDLHTHLCGGEMTLFLDFQDM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00660622;
- 90% Identity
- -
- 80% Identity
- -