Basic Information

Insect: Epinotia demarniana
Gene Symbol: -
Assembly: GCA_945869435.1
Location: CAMBUM010000216.1:538354-545508[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.043 4.2 9.5 8.2 1 23 130 152 130 152 0.98

2 15 0.016 1.5 10.9 8.3 1 23 158 180 158 180 0.98

3 15 4.9e-05 0.0048 18.7 1.5 1 23 186 208 186 208 0.99

4 15 0.0037 0.36 12.8 4.4 1 23 214 236 214 236 0.99

5 15 0.0023 0.22 13.5 0.7 1 23 242 265 242 265 0.97

6 15 0.00089 0.086 14.8 2.0 1 23 271 293 271 293 0.99

7 15 0.00013 0.012 17.4 0.3 1 23 299 321 299 321 0.98

8 15 0.0013 0.13 14.3 2.2 1 23 327 349 327 349 0.98

9 15 0.047 4.6 9.4 0.6 1 23 355 377 355 377 0.98

10 15 0.00048 0.047 15.6 1.5 1 23 383 405 383 405 0.98

11 15 0.00075 0.073 15.0 3.7 1 23 423 445 423 445 0.98

12 15 0.076 7.4 8.7 0.5 1 23 451 473 451 473 0.98

13 15 0.0019 0.18 13.8 2.2 1 23 479 501 479 501 0.99

14 15 0.073 7.1 8.8 1.0 1 23 509 531 509 531 0.96

15 15 2.1 2.1e+02 4.1 0.9 1 15 537 551 537 554 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.043	4.2	9.5	8.2	1	23	130	152	130	152	0.98
2	15	0.016	1.5	10.9	8.3	1	23	158	180	158	180	0.98
3	15	4.9e-05	0.0048	18.7	1.5	1	23	186	208	186	208	0.99
4	15	0.0037	0.36	12.8	4.4	1	23	214	236	214	236	0.99
5	15	0.0023	0.22	13.5	0.7	1	23	242	265	242	265	0.97
6	15	0.00089	0.086	14.8	2.0	1	23	271	293	271	293	0.99
7	15	0.00013	0.012	17.4	0.3	1	23	299	321	299	321	0.98
8	15	0.0013	0.13	14.3	2.2	1	23	327	349	327	349	0.98
9	15	0.047	4.6	9.4	0.6	1	23	355	377	355	377	0.98
10	15	0.00048	0.047	15.6	1.5	1	23	383	405	383	405	0.98
11	15	0.00075	0.073	15.0	3.7	1	23	423	445	423	445	0.98
12	15	0.076	7.4	8.7	0.5	1	23	451	473	451	473	0.98
13	15	0.0019	0.18	13.8	2.2	1	23	479	501	479	501	0.99
14	15	0.073	7.1	8.8	1.0	1	23	509	531	509	531	0.96
15	15	2.1	2.1e+02	4.1	0.9	1	15	537	551	537	554	0.85

Sequence Information

Coding Sequence: ATGTCGCTGGAGCATCCTGCAGGGAGGGTGAAGGATGAGCCTATAGGAGAGAGTGAGGCAGGTGCTTCAGATGGCGCGTACACACATCATCAGGTGAAGGAAGAGCAAGAGGGTGAAGCTGGTCATATAAAGGGGGTGAAAAAGGAGCCCACATTGTCGAGCGCGACTTCTGAGCCTGAGGGGAGGCTACCAGAGAATGAAGCAAGCATACCTGGTCCCATAGTGAAGGTGGAGCCCGGGGTgagcgcggcggccgcgcgcgccgacctGTACCCGGGCCACACGGTGAAAGGGGAGCTCGTGGTGGGCCCCGTGGAGCTGCATCGTCCCAAAGTGACCTTGGTGCATCCAGGACCTACTCAACAGGAAGGTGTCGGGGAAAAACGACACAAATGTGCCCACTGTAGTTACTCTAGTGCCTCTAAATACCACGTCCAACGACACACAAAGACGCACACAGCGGATAAACCACACAAATGTGCCTACTGTAGTTACTCAAGTACCTCTAAATACCACTTCCAAAGACACACAACGACGCATGCAGAGGCCAAAAAATACAAATGTGAACAATGTAGTTACGCCAGTACCCGTGAGGACTATTTACAACGTCACATAAAGAGGCACACAGCAGATAAACCTTACAAATGTGCCCTCTGTAGTTACTCTAGTGCGTTTAAACACAACTTAAAACAACACACAAAGACGCATGTACAGAACAAAGAATTCAAATGTGATCAATGTAGTTATGCCAGCATCAATAAAGCTCATTTAGAACTTCACGTGATGCGAGTACACACTGGCGAAAGACCTTACAAATGTGACTATTGCAGTTACGCTAGCGCCCAAAGGTGTGACCTGATGATGCACCAAAGAGTGCACACTGGAGAGAAACCATTCAGTTGCGACATATGCAGCTACGCGACCGCCCGCAAGCGCGACCTCACCGTCCACGCTAGAACGCACACTGGGGAGAAACCGCACAAATGTAGCTACTGCAGTTACGCCAGCGTTCGCAAACGGGACTTGTTGGTCCACGAGAGAACGCACACGAGCACGAAGCCTTTTAAATGTGGGTACTGCAGCTTCGCTAGCGAGGCGAAAAGTCAATTGCTGATTCATGAGAAGAAACACAGTGGTGAAACAATGTATAAGTGCGACAACTGCGACTTTGCTAGCACCGTAAAAAGTAACTTGGAAAGCCACTTCAAAAAACACGAATCTGGCCAGTGTAATGTTACGGATAAAAGTGAAGTAAGCGATGAGCTTTACAAATGTCTCCACTGTAGTTACTCTTGTGACCGGCAAAGTGATTTGCTAGCCCACGAGAAAGTACACaagagcaaaaaaaaacacaaatgcaGCTACTGCAGTTATGCCAGCGCAATAAAAATTAACGTTATAGCCCACGAGAGAACACACACAGGAGAGAAACCATTCAAGTGTGTTCAATGTAATTACGCGAGCGCGTATAAAAGTCATTTGTTCATCCACGAAAGGATGCATAAAGGAGACTACGACAAGCCGTACAAATGTAGCCGCTGCAACTTCGCTAGCATCCACAGTCGTGACTTGGTAGCCCACGAAAGTTTACATGCCAGTGACAAACCATTCAAGTGTGCCCACTGCGACTACGCGTGCATGAACAAAGgagacgctacacgactcgatatcggcaggactgcggCTACAGCGGCCAGCCAAGGTCACTCCGTACTAGATTTTATGTCACTTTGCTTGGCAAGCACGTTGTGGTGCAAGACGGACGCCCACAGAAGCGATCAGGGAGATGGCTGCCATAAGCCTGGCACCTGTCTATGCGCCGAGTACCTAAATACTACGATGCTGGAAAATATCGTAAGATTGCAAATAAAAGACCTTGAAACCCCGAGCGACGCCTACATGGCGCACGGCGAATTCAACCCTCTCAGGGTTAATTACAGAATAGGCGAAAAATTGTATGACCCTAATAAAAAACTCCGCGTCCCATTAGAATAA
Protein Sequence: MSLEHPAGRVKDEPIGESEAGASDGAYTHHQVKEEQEGEAGHIKGVKKEPTLSSATSEPEGRLPENEASIPGPIVKVEPGVSAAAARADLYPGHTVKGELVVGPVELHRPKVTLVHPGPTQQEGVGEKRHKCAHCSYSSASKYHVQRHTKTHTADKPHKCAYCSYSSTSKYHFQRHTTTHAEAKKYKCEQCSYASTREDYLQRHIKRHTADKPYKCALCSYSSAFKHNLKQHTKTHVQNKEFKCDQCSYASINKAHLELHVMRVHTGERPYKCDYCSYASAQRCDLMMHQRVHTGEKPFSCDICSYATARKRDLTVHARTHTGEKPHKCSYCSYASVRKRDLLVHERTHTSTKPFKCGYCSFASEAKSQLLIHEKKHSGETMYKCDNCDFASTVKSNLESHFKKHESGQCNVTDKSEVSDELYKCLHCSYSCDRQSDLLAHEKVHKSKKKHKCSYCSYASAIKINVIAHERTHTGEKPFKCVQCNYASAYKSHLFIHERMHKGDYDKPYKCSRCNFASIHSRDLVAHESLHASDKPFKCAHCDYACMNKGDATRLDIGRTAATAASQGHSVLDFMSLCLASTLWCKTDAHRSDQGDGCHKPGTCLCAEYLNTTMLENIVRLQIKDLETPSDAYMAHGEFNPLRVNYRIGEKLYDPNKKLRVPLE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -