Basic Information

Insect: Epinotia demarniana
Gene Symbol: -
Assembly: GCA_945869435.1
Location: CAMBUM010000144.1:1304084-1312074[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00018 0.017 17.0 4.4 2 23 187 208 187 208 0.97

2 11 3.5 3.4e+02 3.5 7.6 1 23 213 236 213 236 0.96

3 11 0.0048 0.47 12.5 5.5 1 23 242 264 242 264 0.97

4 11 5.3e-06 0.00052 21.8 4.4 1 23 269 291 269 291 0.99

5 11 0.0019 0.19 13.7 0.1 1 23 297 319 297 319 0.96

6 11 0.0036 0.35 12.9 1.3 1 23 325 347 325 347 0.99

7 11 1.6e-05 0.0015 20.3 1.8 1 23 354 376 354 376 0.99

8 11 0.061 5.9 9.0 0.2 1 23 381 403 381 403 0.98

9 11 1e-05 0.001 20.9 4.9 1 23 409 431 409 431 0.98

10 11 1.4e-05 0.0013 20.5 3.2 1 23 437 459 437 459 0.96

11 11 2.5e-05 0.0024 19.7 3.0 1 23 465 487 465 487 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00018	0.017	17.0	4.4	2	23	187	208	187	208	0.97
2	11	3.5	3.4e+02	3.5	7.6	1	23	213	236	213	236	0.96
3	11	0.0048	0.47	12.5	5.5	1	23	242	264	242	264	0.97
4	11	5.3e-06	0.00052	21.8	4.4	1	23	269	291	269	291	0.99
5	11	0.0019	0.19	13.7	0.1	1	23	297	319	297	319	0.96
6	11	0.0036	0.35	12.9	1.3	1	23	325	347	325	347	0.99
7	11	1.6e-05	0.0015	20.3	1.8	1	23	354	376	354	376	0.99
8	11	0.061	5.9	9.0	0.2	1	23	381	403	381	403	0.98
9	11	1e-05	0.001	20.9	4.9	1	23	409	431	409	431	0.98
10	11	1.4e-05	0.0013	20.5	3.2	1	23	437	459	437	459	0.96
11	11	2.5e-05	0.0024	19.7	3.0	1	23	465	487	465	487	0.98

Sequence Information

Coding Sequence: atGGACACGAGGGTTTCATGTCGCTGCTGTCTCCTGCGGCCTTCGGACAAAGATTTAAAGATGCCGTACACTCAACTGGGCATTACGGAGATTTACGCTGATAtgctgaaggaatgcttcgagatACATCTAACAACATTATCAAGCATCGATTGCGGTATCTGCGAGGTGTGTGTGGGCCGGCTGCGGGACGCGAGCGACTTCAAGCGGCAAGTGCAGCGCAGCCAGGCGGAGCTGCAGACGCGGCTGCGGGGAGCACTGTTTGTCAAAGAGGAAGAGCCTCTGGTCAAGTCGGAGATGTCGGAAGACTGTGTGGACGaCCAGGAAGTAAAACCCGAGGTCTCAGAGGACCCTCTCCCGAACGACGGCAGTGAAGTCTTCATGGAGTTTGTGCTAAACTTCGAGGACCAAGTGTCGAGCGTTTGGAAACAGGAGCCACTGTTCGAATTCGCCCCGATCTCAGAGTCAAGGTCAAGGTCGTCTGCGAGGTCCAAGGGCGTTGGGTTGGACTACGTGTCGGGGagggataaaaaaataaaaaaggaacaTCTCGGGAACACATGTGACACTTGCGGTAAACAATTCACGCAAAAGACGAAGTTGGCACACCACAAAAGGCTTCACTTAGGAGAGCGCTACAATTGTCGACTATGCAACGtacaattcaaattcaaatgtcATCTAGACCTACACAATAGAAGGTTCCACGTCGGAGAGAAGCCCTACAACTGTGAAATATGCTATAAGAAATTCGGAACAAGTCGAGCGTTGTGCAAACATAAACATGTTCACATAGGGAAACGATACCGCTGCGGGGAATGCGATAGGCTTTTCTCAAATCGTCATAACTTGAAAAATCATAAACGCACACACACTGGAGAGATACCCTACAACTGCGATATGTGCGGAGCTAAGTTTAAAATCAAACGCGCTCTAATAGCACACGTGGGTAGGCATATGGGACAAATGAACTTTCGTTGTGAATATTGTTCGACAAAGTTCTGGGATTACGGGAGTCTGTTGGTTCATAAACGAACTCACGCAGAGGACAGTCAAAACTATAGCTGCGATGTGTGCAGTAAAGTGTTTTCGTTTAAAAACAGATTAGTCACTCATATGAAAACGCACACGTTAAGGAAATATCCTTGCGAGTTCTGTACAGCAGAGCTGGCGACTATGGGAAGTTTGAAGCAGCATAAACTGACTCACACAGGAGAGAAGGCGTACCCGTGCGACTATTGCAATAAGCAGTTTCGTTACAAACACAATCTGACCGCTCACTTGCACATACACACTGGAGAGAAACCGCACTGCTGCGAAGTCTGCGGGAAACAATTTGGACGGAAAGATAATTTGAAGACACATTTGGAAATTCATGCCGAAGGAAAGAGGTATCACTGTGAGCTTTGTACGAAATCGTATCCGACTAAAGAAGGTTTGAGACAGCATAGGCGGACTCACACGAAGGAGAAAACTGTTACTAAATCTGTCAAAAGACAAAAAATAGAATACATAGGGAATATAATCCCGTAA
Protein Sequence: MDTRVSCRCCLLRPSDKDLKMPYTQLGITEIYADMLKECFEIHLTTLSSIDCGICEVCVGRLRDASDFKRQVQRSQAELQTRLRGALFVKEEEPLVKSEMSEDCVDDQEVKPEVSEDPLPNDGSEVFMEFVLNFEDQVSSVWKQEPLFEFAPISESRSRSSARSKGVGLDYVSGRDKKIKKEHLGNTCDTCGKQFTQKTKLAHHKRLHLGERYNCRLCNVQFKFKCHLDLHNRRFHVGEKPYNCEICYKKFGTSRALCKHKHVHIGKRYRCGECDRLFSNRHNLKNHKRTHTGEIPYNCDMCGAKFKIKRALIAHVGRHMGQMNFRCEYCSTKFWDYGSLLVHKRTHAEDSQNYSCDVCSKVFSFKNRLVTHMKTHTLRKYPCEFCTAELATMGSLKQHKLTHTGEKAYPCDYCNKQFRYKHNLTAHLHIHTGEKPHCCEVCGKQFGRKDNLKTHLEIHAEGKRYHCELCTKSYPTKEGLRQHRRTHTKEKTVTKSVKRQKIEYIGNIIP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654613;
90% Identity: -
80% Identity: -