Edem047005.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010001620.1:19386-32725[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.076 7.3 8.7 1.4 1 23 168 190 168 190 0.96 2 13 0.0033 0.32 13.0 0.1 3 20 199 216 197 217 0.88 3 13 8.2e-05 0.008 18.0 1.4 2 23 229 250 228 250 0.97 4 13 0.0023 0.23 13.5 0.6 3 23 258 278 257 278 0.97 5 13 0.06 5.9 9.0 6.2 1 23 286 309 286 309 0.87 6 13 5.6e-07 5.4e-05 24.9 2.3 1 23 314 336 314 336 0.98 7 13 0.00025 0.025 16.5 1.5 1 23 343 365 343 365 0.98 8 13 9.5e-05 0.0092 17.8 2.9 3 23 373 393 371 393 0.98 9 13 1.3e-05 0.0013 20.6 3.5 1 23 399 421 399 421 0.98 10 13 0.00037 0.036 16.0 1.2 1 23 519 541 519 541 0.98 11 13 1.4e-05 0.0013 20.5 3.7 2 23 549 571 548 571 0.96 12 13 2.4e-05 0.0024 19.7 2.4 2 23 580 601 579 601 0.97 13 13 0.0041 0.4 12.7 0.2 3 17 609 623 608 624 0.91
Sequence Information
- Coding Sequence
- ATGGATAAATGGACTAATAGCTGCCGTGCTTGTCTGTCTACATCGGAATCGTTTACGTACTTCTTGCATGAAAATATATCTCCCGAAGAGTATTGGTTTTGTACTTCTCTTGAGGTGAAGGAAGATGCCCTTCCGAAATCTCTTTGCAATGGTTGTTATGGGTTACTCACACAATTTACAGAATTTAAAAAACTATGTATACAGTCAGAAAATATATTGTGTAATATTTTAAAGAGCTTGGAGGCTGAAAACAAAAACTGTCTGAATTTAAAATCAGAACTTGGGGATAATGTATTTGAAGAAAATCTTGATAATAATACAGTGGTGAAGATTGAACATTTGGCTGATATTGATGTCTTAGATACAAATGTGTGTGATGATATTTACGAAGAAGAAGGCACAACGGTCTACAATCCCATCACAAAGGTGAACAATTCACCAACAAGGAAGAAATATGCAAAACCTGTGCCAAAGTTGAAGAAAACCAGACGAAAGTTCCAATTTACCTGTGAATTGTGTTACAAAAAGTTTGGCTACAGAGAACGCTATGAAGCACACAAGTTGGAGCACGAGGGAAAAACTACTACAATATACTGCGCACCGTGCAACAAGACCTTTTCTACCTGGGGCGGGCTGAAGCGGCACAAGGACTGCGAGCACACGCGGCTGACAGTCGACCAGCTCACCTGCAAACTGTGCTCCAAGgtgtTCAAGAGCCCGCGAACGCTGAGTATACACCGTAGCACCCACGGAGAAAGGAAACTCAGAATATGCGACATCTGCGGGAAGGGATGCAAAAGTGATCTGACTTTGAAGGCCCACCTAGAAACGCATATAGAAAACCGCGAGCGTCGCTACACCTGCCCACACTGCGGCAAGAAGTTCTTCAGCAAGAAGACGTGCGCCTCCCACGCGTCCCGCCGGCACAGTGACCGTCGCTACATCTGCCACCACTGCGAGTACCCCTTCACCGACAAGAGCAACCTCGCCAAACACATCATGATACACGAAGGCAAACAGCCGGTGCACAAATGTGACCTCTGCCTTAAGACTTTCGCGGCCCAATCCTCCCTGGTCATACACAAGAGGACACACACTGGGGAAAAACCGTTCGGATGCAGTTACTGCTCGAAAAGTTTTTCGAATAAGCGGATGTTGGTGGATCATCACAGGATACATACGGGAGAGAAGCCGCATAAGTGCACGGTGTGTGAGCAGAGCTTTACGCAGCGGGGGACCATGAAGCGGCATATGAAAGTGCATGATAGGATATACCTCAATGTTAAAAATGAAATGGAAGAGAAAGATACATATGAGGAGAAGAGTGAACAGGAGAATAGAACAGAATCATGTTCCTTGTTAGAAATTAAGGTTGAAGCAGCTAAAGAGGATGTAGCGGAAGAAGCGTTAAGTGGTATTAATGATGTCACTGGTTCAGATGCCCCAGAAACAGATTTTGGAGGAGAGGACTTTGAAGACCATATTAAGGCAACGAAAGTGAGCGCAACCAAAGTTGTATCAAATCCAACAGCAAGAAACATCCTGCCTAAAAACTTCAAGTGTGACCTATGCAATAGAAAGTTTGCCTTCAAGGAGCGTTTGGAGGGCCACATGTTGAGACATCAGGGGAAAACAGGCCCAATACAGTGTAAGGAGTGCCACAAAACCTTTACAGTCTGGGAAACACTGCGCCGGCACATCGAGTCGTGCCACTCGCGACTCTCTTTCAAGGACGTGACTTGCCAAGTCTGCTCCAAAGTGTGCAAGACTTCTGACACGCTCAGGGTCCATTTGAGAACGCATAAAGAGCGACGGGAGAGAATGTGTGACGAGTGTGGAAAAACTTTTAAAAGCAATGTCACTTTGAAGGTAAGAGTTATGCTGGCAAATTATCCTATTCACCTTCAAGGAAGTGATTTCAAGTCCACTCAAGTCTGCAAGAACGCTGACGAATCACCTTAG
- Protein Sequence
- MDKWTNSCRACLSTSESFTYFLHENISPEEYWFCTSLEVKEDALPKSLCNGCYGLLTQFTEFKKLCIQSENILCNILKSLEAENKNCLNLKSELGDNVFEENLDNNTVVKIEHLADIDVLDTNVCDDIYEEEGTTVYNPITKVNNSPTRKKYAKPVPKLKKTRRKFQFTCELCYKKFGYRERYEAHKLEHEGKTTTIYCAPCNKTFSTWGGLKRHKDCEHTRLTVDQLTCKLCSKVFKSPRTLSIHRSTHGERKLRICDICGKGCKSDLTLKAHLETHIENRERRYTCPHCGKKFFSKKTCASHASRRHSDRRYICHHCEYPFTDKSNLAKHIMIHEGKQPVHKCDLCLKTFAAQSSLVIHKRTHTGEKPFGCSYCSKSFSNKRMLVDHHRIHTGEKPHKCTVCEQSFTQRGTMKRHMKVHDRIYLNVKNEMEEKDTYEEKSEQENRTESCSLLEIKVEAAKEDVAEEALSGINDVTGSDAPETDFGGEDFEDHIKATKVSATKVVSNPTARNILPKNFKCDLCNRKFAFKERLEGHMLRHQGKTGPIQCKECHKTFTVWETLRRHIESCHSRLSFKDVTCQVCSKVCKTSDTLRVHLRTHKERRERMCDECGKTFKSNVTLKVRVMLANYPIHLQGSDFKSTQVCKNADESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -