Edem025587.2
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000464.1:62570-75124[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 8.3 8.1e+02 2.3 0.3 3 16 55 68 53 70 0.84 2 14 0.00013 0.013 17.4 3.6 1 20 199 218 199 221 0.94 3 14 0.48 47 6.2 0.2 1 12 227 238 227 240 0.91 4 14 0.00013 0.013 17.4 3.6 1 20 241 260 241 263 0.94 5 14 1.5 1.4e+02 4.7 0.8 1 11 269 279 269 281 0.93 6 14 0.00011 0.01 17.7 2.0 2 20 326 344 325 347 0.93 7 14 0.00011 0.011 17.6 0.4 1 23 353 375 353 375 0.99 8 14 3e-06 0.00029 22.6 2.1 1 23 381 403 381 403 0.98 9 14 6.3e-06 0.00061 21.5 0.6 1 23 409 431 409 431 0.98 10 14 1.2e-05 0.0011 20.7 0.1 1 23 437 459 437 459 0.96 11 14 6.6e-07 6.4e-05 24.6 1.3 1 23 465 487 465 487 0.98 12 14 0.00097 0.094 14.7 4.9 1 23 493 515 493 515 0.98 13 14 0.00045 0.044 15.7 0.3 5 23 524 542 522 542 0.93 14 14 3.4e-05 0.0033 19.3 5.3 1 23 548 571 548 571 0.97
Sequence Information
- Coding Sequence
- ATGGACTTTAAACAAATGTGTCGAATTTGCCTTGAATCAAACAAAATATCATACGATATTTACACCAGCTTCTATGCGAAAAGAAGTACTTTGTACTGTGATATGCTTTCCAATTGCACAAAACTTAAGCCCATCAAAAATGATGGTCTACCCAGCACAATATGCAAAGACTGCAGCCGCCAGTTGAAGCGTTCTTTCGCCTTCAATCTGAAATGTGAAGAGAGTGACATAAAGCTTAGAAACTATTTGGAAAACATCAATATTGTTGTAAAAGATGATGATGACCATAAATCCAATATAATTGAAGGGGAAGACATTCTTGACCTTAAAACTGAAACAGATGAAGTGAAATGTGAAGAATTGGATGTCAAAGACGAAGTGCATGCACTGGAAAATGGAAATAGTGAAGTCAAAGATTATACAGATAATGATATTAAGGATGATATTAAACTCGAGGTAAACTGCAATGATTATGACAATGGCAATGACAGTGGATGGGACGCTGACGATGACAACATCTTCCTAGGAGATATACAGCTGACAAAGAAGAACAAAGAGGATTTAGGGCCCCAGCTGCCGGAGAGCAAGTTGCCCCACCAGTGCGACATCTGTGGCAAGTTCCTGAGCACCAAGAGCAACCTGAAGGCGCACAAGATCTGCCACACGGACCTGCGGCCGTACAAGTGCGGAGACTGCCCGGCTACCTTTAGCAAGTTGCCTCACCAGTGCGACATCTGTGGCAAGTTCCTGAGCACCAAGAGCAACCTGAAGGCGCACAAGATCTGCCACACGGACCTGAGGCCGTACAAGTGCGGAGACTGCCCGGCTACCTTCAGGGGATTTGCCAGGGAGCAAGTTGCCTCACCAGTGCGACATCTGTGGCAAGTTCCTGAGCACCAAGAGCAACCTGAAGGCGCACAAGATCTGCCACATGGACCTGAGGCCGTACAAGTGCGGAGACTGCCCGGCTACCTTCAGTGCGACATCTGTGGCAAGTTCCTGAGCACCAAGAGCAACCTGAAGGCGCACAAGATCTGCCACACGGACCTGCGGCCGTACAAGTGCGGAGACTGCCCGGCTACCTTTAGAGGCTACAGCGCGCTGTTCCAACACAAGAAAGTCCACACACGCGAGACCCCGTACCACTGCGAGTACTGCCCGAAGCAGTTCAGCCGGCGCACCGGTCTCGTCAACCACATCCGGATGCATACAGGTGAAAAACTGTACAGCTGCGACGTGTGTTTCAAAACGTTCGTGCAGAGCGCGCAGCTCTCCATCCACATAAAGAGGCACAAGGGCGACAAGACCTACCTGTGCCAGGACTGCGGGAAAGGGTTCCCTATAAAAGCAGACCTGAAGGTACACCAGAGGATCCACAACGGTGAAAAGCCTTATTCGTGTCATCTCTGCACCAAGACCTTCGCCACCTCCGGCAACCTCTCCATACACATCAGGATACACAACAAGGAAGTCAGGTATCACTGTAAAGAATGTCAACGCGGCTTCGTCACCTGCAGCGCCTACAACGTCCACCTGAAACGACATAAAGGCCAGAGGGACTACCCCTGCGAGTGCGGGAAGACCTTCTACACCTCCTCGGCCCTAAAACAACACAAGGTGGTACACACCGGGGAAAAGAAGTACCAATGCAAGATTTGCGAGAGAAAATTCTCACAGACCAGCCATCTGAGCAGACATTTTAAGAGAGACCACGCGAAACCCAACATGCCTCTACCGTCTTCGGATCATTATAAGTTGGTTATAACGCATGAGAGCAAGTCTTTTAACGTGTTCAGTTCTACGACTGCGAATCAGGGTGTGAAGTGCGAGGGGACGTAA
- Protein Sequence
- MDFKQMCRICLESNKISYDIYTSFYAKRSTLYCDMLSNCTKLKPIKNDGLPSTICKDCSRQLKRSFAFNLKCEESDIKLRNYLENINIVVKDDDDHKSNIIEGEDILDLKTETDEVKCEELDVKDEVHALENGNSEVKDYTDNDIKDDIKLEVNCNDYDNGNDSGWDADDDNIFLGDIQLTKKNKEDLGPQLPESKLPHQCDICGKFLSTKSNLKAHKICHTDLRPYKCGDCPATFSKLPHQCDICGKFLSTKSNLKAHKICHTDLRPYKCGDCPATFRGFAREQVASPVRHLWQVPEHQEQPEGAQDLPHGPEAVQVRRLPGYLQCDICGKFLSTKSNLKAHKICHTDLRPYKCGDCPATFRGYSALFQHKKVHTRETPYHCEYCPKQFSRRTGLVNHIRMHTGEKLYSCDVCFKTFVQSAQLSIHIKRHKGDKTYLCQDCGKGFPIKADLKVHQRIHNGEKPYSCHLCTKTFATSGNLSIHIRIHNKEVRYHCKECQRGFVTCSAYNVHLKRHKGQRDYPCECGKTFYTSSALKQHKVVHTGEKKYQCKICERKFSQTSHLSRHFKRDHAKPNMPLPSSDHYKLVITHESKSFNVFSSTTANQGVKCEGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -