Basic Information

Insect: Epinotia demarniana
Gene Symbol: -
Assembly: GCA_945869435.1
Location: CAMBUM010000457.1:83141-92267[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00087 0.084 14.8 8.4 1 23 145 167 145 167 0.98

2 13 1.7e-06 0.00016 23.4 2.2 1 23 173 195 173 195 0.97

3 13 1.1e-06 0.00011 23.9 5.4 1 23 201 223 201 223 0.98

4 13 2.1e-06 0.00021 23.0 1.1 1 23 229 251 229 251 0.99

5 13 0.00032 0.031 16.2 0.1 1 23 261 283 261 283 0.98

6 13 0.00068 0.066 15.2 1.2 1 23 312 334 312 334 0.97

7 13 0.00091 0.088 14.8 0.7 1 23 340 362 340 362 0.97

8 13 0.057 5.5 9.1 6.5 1 21 368 388 368 390 0.95

9 13 5.7e-07 5.6e-05 24.8 1.6 1 23 396 418 396 418 0.98

10 13 2.4e-05 0.0023 19.7 5.7 1 23 424 446 424 446 0.98

11 13 1.5e-05 0.0015 20.4 2.1 1 23 464 486 464 486 0.99

12 13 1.7e-06 0.00017 23.3 3.4 1 23 492 514 492 514 0.97

13 13 0.034 3.3 9.8 0.7 1 14 520 533 520 534 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00087	0.084	14.8	8.4	1	23	145	167	145	167	0.98
2	13	1.7e-06	0.00016	23.4	2.2	1	23	173	195	173	195	0.97
3	13	1.1e-06	0.00011	23.9	5.4	1	23	201	223	201	223	0.98
4	13	2.1e-06	0.00021	23.0	1.1	1	23	229	251	229	251	0.99
5	13	0.00032	0.031	16.2	0.1	1	23	261	283	261	283	0.98
6	13	0.00068	0.066	15.2	1.2	1	23	312	334	312	334	0.97
7	13	0.00091	0.088	14.8	0.7	1	23	340	362	340	362	0.97
8	13	0.057	5.5	9.1	6.5	1	21	368	388	368	390	0.95
9	13	5.7e-07	5.6e-05	24.8	1.6	1	23	396	418	396	418	0.98
10	13	2.4e-05	0.0023	19.7	5.7	1	23	424	446	424	446	0.98
11	13	1.5e-05	0.0015	20.4	2.1	1	23	464	486	464	486	0.99
12	13	1.7e-06	0.00017	23.3	3.4	1	23	492	514	492	514	0.97
13	13	0.034	3.3	9.8	0.7	1	14	520	533	520	534	0.91

Sequence Information

Coding Sequence: ATGGACGCACTGAAGTGTGGCTGCTGCCTGCTGCGTCTCCCAGACAAGGGTCTCAAGACTCTGTACAGCCATCACGGCAAACCGGAGATATATTCAGACATGCTGCGGGAATGCTTCGATATACAACTTATATTGGGCAATGATCAGTGTGGTATCTGCGAGGTGTGCGTGCGCCGGCTGCGGGACGCGAGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCGGAGCTGCAGCGGCGGCAGGGAGCACCGAGTGCCAGGGGTGACTTTGCCCCGACCGTTACCGTAAAAGTGGAGACAGTTTGCGAAGAGGAAGCCATGATACGTGAAATCAAGTTGGAGAATTCTGACGTTGAGATGGATCATGAGGAGGTTGTATCAGTGGCACTATACGCCGCGCCGCCTGCGGCTCCACCCGCCCGCGACGCCGTCTACAGCTGCGATATATGCCACAAGTCATTCGACCACCAATGCAGACTCAGAGTCCACCGCCGCAGCCACACAGGAGAGAAACCCTATGCGTGCAAAGTATGCCACAAAAAATTCGCACAAAAAGGCAACTTGAATGCCCATTTAAAATATCACACGGGCGATTTTCGATTTTCCTGCGACAAATGCAAAAAGCGATTTACACAAAAATCTCACTTGAGTAAACACATGCTGATACACACTGGAGTAAAACGATATACGTGTAAAGTATGCAAAAAACGATTCGCACTAAAAGGCAATTTGACCGTTCATTTAAATACTCATTTGAAATATCACACCAATGGTAGTAAATTCTCTTGCGATGTGTGCAACGAACGATTTACAGAAGAAGCCGATTTGAATGAACATAATCGTATTCACAAAGACGTAATTTTTATTAAAGAAGAGGCCGTAGAAGAATGTAACTTAAATACTCAATCAAAAGACGTTTCAGGAAAGAAACCTTACACCTGTGAAATCTGCAAGAAACAGTTTGCAGAAAAGGGCAATTTgaactttcatttaaaaaaccACACCGGGGATTATCGATTCTCTTGTGAGATATGCGAAAGAAAATTCACACTTAAGTCTCGCTTGGATACGCATATCCTTCTCCACACTGGAGGCACACCTTTCTCGTGTGACGTATGCAATAGAAAGTACACGAAGAAATGTGCTTTGAAAGTTCATTTAAAATGTCACATGGGGGATTATAGGTTCTCTTGTAACGTATGCAATAAACGATTTATACAAAAGGATTCCATGATGAAACACATGCGGGTACACACAGGGGAAAAGCCCTACAGctgtaaaatatgtaaaaagcaGTTCTCCCAAAAGTGTAATTTGAAGACCCATTTGAAAGGTCACGTCAGTAAATCGGAATTAGATGCAGCTGACTTGGGAGACCTAACATCACCATACTCGTGCGAGACGTGCAAGAAACGATTTAAACTAAAATCCGCCATAGAAAGACACATGCAAACACACACAGGTGAAAAACTATTCAGTTGCGAAATGTGtggaaaacaatttaaaagGAAGAACGATTTATGTAAACATATGGATATACACATGGGGATAAAACCATACATGTGTGAAATATGCAGTAAGCGGTTTACACAGAAAAGATCTGCAGGAGTTGACATATTTAACGATAAAATTGAACAGTTTAAAGGGAAAGTGATGAAATATGTCGGCTCACTGGATATCCCAAAGTAG
Protein Sequence: MDALKCGCCLLRLPDKGLKTLYSHHGKPEIYSDMLRECFDIQLILGNDQCGICEVCVRRLRDASDFKLQVQRSQAELQRRQGAPSARGDFAPTVTVKVETVCEEEAMIREIKLENSDVEMDHEEVVSVALYAAPPAAPPARDAVYSCDICHKSFDHQCRLRVHRRSHTGEKPYACKVCHKKFAQKGNLNAHLKYHTGDFRFSCDKCKKRFTQKSHLSKHMLIHTGVKRYTCKVCKKRFALKGNLTVHLNTHLKYHTNGSKFSCDVCNERFTEEADLNEHNRIHKDVIFIKEEAVEECNLNTQSKDVSGKKPYTCEICKKQFAEKGNLNFHLKNHTGDYRFSCEICERKFTLKSRLDTHILLHTGGTPFSCDVCNRKYTKKCALKVHLKCHMGDYRFSCNVCNKRFIQKDSMMKHMRVHTGEKPYSCKICKKQFSQKCNLKTHLKGHVSKSELDAADLGDLTSPYSCETCKKRFKLKSAIERHMQTHTGEKLFSCEMCGKQFKRKNDLCKHMDIHMGIKPYMCEICSKRFTQKRSAGVDIFNDKIEQFKGKVMKYVGSLDIPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -