Basic Information

Insect: Epinotia demarniana
Gene Symbol: -
Assembly: GCA_945869435.1
Location: CAMBUM010000653.1:149783-154811[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00046 0.045 15.7 4.1 1 23 134 156 134 156 0.99

2 13 0.00019 0.018 16.9 0.9 2 23 162 183 161 183 0.96

3 13 0.019 1.9 10.6 1.1 1 23 184 206 184 206 0.98

4 13 8.7e-05 0.0085 18.0 2.6 1 23 220 242 220 242 0.99

5 13 4.4e-06 0.00042 22.0 4.6 1 23 254 276 254 276 0.97

6 13 9.9e-07 9.6e-05 24.1 3.0 1 23 282 304 282 304 0.99

7 13 1.3e-05 0.0013 20.5 3.8 2 23 311 332 311 332 0.98

8 13 6e-08 5.8e-06 27.9 0.9 1 23 338 360 338 360 0.96

9 13 8.3e-06 0.00081 21.2 1.2 1 23 366 388 366 388 0.98

10 13 4.6e-06 0.00045 22.0 0.3 1 23 394 416 394 416 0.98

11 13 0.021 2 10.5 5.4 1 23 422 444 422 444 0.97

12 13 2.8e-08 2.7e-06 29.0 1.5 1 23 450 472 450 472 0.99

13 13 0.00052 0.05 15.5 1.2 1 22 478 499 478 500 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00046	0.045	15.7	4.1	1	23	134	156	134	156	0.99
2	13	0.00019	0.018	16.9	0.9	2	23	162	183	161	183	0.96
3	13	0.019	1.9	10.6	1.1	1	23	184	206	184	206	0.98
4	13	8.7e-05	0.0085	18.0	2.6	1	23	220	242	220	242	0.99
5	13	4.4e-06	0.00042	22.0	4.6	1	23	254	276	254	276	0.97
6	13	9.9e-07	9.6e-05	24.1	3.0	1	23	282	304	282	304	0.99
7	13	1.3e-05	0.0013	20.5	3.8	2	23	311	332	311	332	0.98
8	13	6e-08	5.8e-06	27.9	0.9	1	23	338	360	338	360	0.96
9	13	8.3e-06	0.00081	21.2	1.2	1	23	366	388	366	388	0.98
10	13	4.6e-06	0.00045	22.0	0.3	1	23	394	416	394	416	0.98
11	13	0.021	2	10.5	5.4	1	23	422	444	422	444	0.97
12	13	2.8e-08	2.7e-06	29.0	1.5	1	23	450	472	450	472	0.99
13	13	0.00052	0.05	15.5	1.2	1	22	478	499	478	500	0.92

Sequence Information

Coding Sequence: ATGCTCAACGTACAGAATACTTGCCGAACCTGTATGAAAAACTGTGAAACATTGGTGGACCTTTACGATCCATGGAAGACGGGGAATAATAAATGTCTGACGCTTTCAGAGATTTTGGAAGCATGCACAGCTACACagGTGTCCAAAGAAGATGGGTTTCCCCAAAAATTATGCGAAGATTGCGTCAAAGCTCTTGAATTTATGCACTCGTTTCGAATGCAAGTACTCAATTCCTATGAGGCGTTCAGAAAAATAATTGAAACACAAGCAAATGTTAAAAATGAAGACATTGATGTTGAACTCAAGACCGAAAATCAATTTGATTATGAATTCTGTTACGATGACTTTTTACTTGACAACTTTACCAAACATGAGACTGAAGATAGTGAAGATAAAGGGTATGAGTGCAACATATGCAACAAACATTATACGAATGAGAAAAGGTTTgttaatcatttgaaaactcaCGAAGAACCGGAATTACCATGCCCAGTTTGTAAGAAAGCTTTTCATAAACAGTCCACCCTAGACCGCCATGTAGCTAAACACTTCAAATGCACTATTTGCCTTAACCACTTTGAGTCTGAAAAGTTACTATTAGAGCATATAAACGAGCATGTAGACATTGAAATTAAGACTGAACAAGAGGATACTCTGTACAAATGCACTGAGTGCGATGTAGTGTATACAAAACATAGATCATTAGCGATGCATATGAAGAAGCATCGTAAAGCTGATAAAACGAATAAGGAAAAGGCTTTCCACTGTGATGTCTGTGGGAAGAAGTTTACATTTAAGACATTGCTCCGTAGGCACATGAAGTTGCATAGTGAAGAGCGACCATATCAGTGCCAACAGTGCAACAAAAGTTACTCAAGAAATGACCAGTTCCAGGAGCATATGAACAGGCATAACGGGATTAAACCTAATGTTTGCCCACACTGTAGTAAAGCATTCACCCAGCTATGCAGCCTCAAAGACCATATCCGGACACACACCGGGGAGACTCCGTACCTGTGCTCGGAGTGCGGCAAGGGCTTTAACAACAGCTCCAATCTACGCCAGCATATGATGCGACACACCGGACTGAAGCCCTTCACCTGTAACCTATGTCCTAAAAGGTTTTCAACTAAAGGTCAAATGACCAGCCACCTTGGCACGCACACGGGCGTGCACCCGTATAAGTGCGACGAATGCGGAGCCGCCTTCACGAAGCCCAACTCGCTCAAGAAACACAAGCTCATACATTTGGGAATCAAACCATTCGCCTGCGATACGTGCGCCATGCGATTCTCCTGCAAAGACCACCTTAAGCGTCACTACCGCATCCACACCGGGGAAAAACCGTATCGCTGCAAGTACTGCGACCGAGCGTTCACGCAGAGCAACGACCTCGCCAAACACATGCGCATGCACGTCGGACAGAACATCTACCAGTGCACGCAATGCGATATGCGTTTCCGTCTGCTAAGCGAACTGAAACAGCACTACCCTACCCACTACATTCCCGACGGGGAAGTCCCCGTCATACAAACCAAGGTGCCCGCCCCAGTCCTACTGAAACCGACGGAGGAAAACAAAGATGCCCAGGGCTCTATCACTATCACTTTCAGCAGCAACGGTATGGACAAGGACGGGTTACATGGGAATATTACTATTGATATCACACCGCAGACATAG
Protein Sequence: MLNVQNTCRTCMKNCETLVDLYDPWKTGNNKCLTLSEILEACTATQVSKEDGFPQKLCEDCVKALEFMHSFRMQVLNSYEAFRKIIETQANVKNEDIDVELKTENQFDYEFCYDDFLLDNFTKHETEDSEDKGYECNICNKHYTNEKRFVNHLKTHEEPELPCPVCKKAFHKQSTLDRHVAKHFKCTICLNHFESEKLLLEHINEHVDIEIKTEQEDTLYKCTECDVVYTKHRSLAMHMKKHRKADKTNKEKAFHCDVCGKKFTFKTLLRRHMKLHSEERPYQCQQCNKSYSRNDQFQEHMNRHNGIKPNVCPHCSKAFTQLCSLKDHIRTHTGETPYLCSECGKGFNNSSNLRQHMMRHTGLKPFTCNLCPKRFSTKGQMTSHLGTHTGVHPYKCDECGAAFTKPNSLKKHKLIHLGIKPFACDTCAMRFSCKDHLKRHYRIHTGEKPYRCKYCDRAFTQSNDLAKHMRMHVGQNIYQCTQCDMRFRLLSELKQHYPTHYIPDGEVPVIQTKVPAPVLLKPTEENKDAQGSITITFSSNGMDKDGLHGNITIDITPQT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654518;
90% Identity: iTF_00660527;
80% Identity: -