Edem009100.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000144.1:729142-738685[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.01 0.99 11.4 3.5 1 23 24 46 24 46 0.99 2 28 0.032 3.1 9.9 0.2 2 23 73 95 72 95 0.95 3 28 0.046 4.4 9.4 0.2 2 23 118 140 117 140 0.95 4 28 0.0037 0.36 12.8 0.1 2 23 146 168 145 168 0.96 5 28 1.8 1.7e+02 4.4 0.1 2 23 204 226 203 226 0.85 6 28 0.00019 0.018 16.9 2.7 1 23 233 256 233 256 0.97 7 28 0.21 21 7.3 0.2 2 23 263 284 262 284 0.95 8 28 8.2e-06 0.0008 21.2 2.4 1 23 290 312 290 312 0.98 9 28 9.5e-05 0.0092 17.8 1.9 2 23 319 340 318 341 0.94 10 28 0.0027 0.26 13.3 5.5 1 23 378 400 378 400 0.98 11 28 0.0002 0.02 16.8 1.6 2 23 427 449 426 449 0.95 12 28 0.43 42 6.3 0.2 2 23 472 494 471 494 0.93 13 28 0.00059 0.058 15.3 0.5 2 23 500 522 499 522 0.94 14 28 0.036 3.5 9.7 4.0 1 23 529 552 529 552 0.96 15 28 6.5 6.3e+02 2.6 0.1 2 10 558 566 558 580 0.82 16 28 0.0016 0.15 14.0 2.2 1 23 587 610 587 610 0.97 17 28 0.011 1.1 11.3 0.5 2 23 617 638 616 638 0.95 18 28 0.003 0.29 13.1 0.8 1 23 644 666 644 666 0.98 19 28 0.016 1.5 10.9 5.6 1 23 710 733 710 733 0.95 20 28 2.4 2.3e+02 4.0 0.7 2 23 760 781 759 781 0.94 21 28 5.9 5.7e+02 2.8 0.6 2 23 804 826 803 826 0.92 22 28 0.0045 0.43 12.6 0.1 1 23 832 854 832 854 0.95 23 28 0.0011 0.11 14.4 1.7 1 23 862 885 862 885 0.94 24 28 0.093 9 8.4 0.4 1 23 890 913 890 913 0.92 25 28 0.005 0.48 12.4 0.8 1 23 920 943 920 943 0.96 26 28 0.00034 0.033 16.1 0.5 1 23 949 971 949 971 0.94 27 28 0.008 0.78 11.8 4.1 1 23 977 999 977 999 0.98 28 28 2.7e-08 2.6e-06 29.0 1.9 1 23 1005 1027 1005 1028 0.96
Sequence Information
- Coding Sequence
- ATGAGGAAACTACTGCATCAGATCATGCAAAACTCAACAGCCATGCCATTCAGGCGAGCCGGAAATATATACAAATGTTTCTTCTGCTTTAACAATTATAATAGGGCCAGCGATCTCAAAGAACATACCAAAACTCATGTCGACAACAACCAGAAAATCAGATCAGTGAAGAGATGCGGAATTAAAACTATTATTAACGTTGATATCACTGAATTAAGGTGCAAGCAGTGTGATGAAGAATTTGACGGTATAACGAATTTCTTGACGCATCTCCAAGTAGACCATAAGAAGAAATGTGATATGGATGGGTTACGATACATAAGTTGTTACAAAATATCAGACGGTGACATGAAATGTCTGATCTGCGACGAGAGTTTCGAATATTTCTATCCTCTCATGCTGCACACCTTAAGGGTACACGTAGTGAGACGGCTAAAATGCGAGATTTGTGGTCTCAGCTTCGGCGCTAAAGACAGCGTGGCCAAACATTACAAAAGCGTTCACGAAACCAATCCAGAAGCTTTCAAATGCAGGCACTGCGAGAAAACATTCtccgcgcaccacaaacgacaCGACCACGAGAAGAGGATACACAACGAGAAGGCCAAGAAATGTCCCATTTGTGGAGAGATATTGGGCAGTACATTCAAAAAGGCGTCTCACATGGCGTCCGTACACAACAAGATGGCAACAGAATTCAAATGCGAGAATTGCCCTAAAGTCTTTCGTCTCCAGAACCATTTAGTGAAGCACAACAAAAGAGTACACATGAAAGAAAAGACCAAAGTGTGTACTGTTTGCGGGGACAAGTTTTTCGAGAATCGATTGCTCGCTTTGCACATGGTCCGGCACAGTGATGAAAAACCATTTGAGTGTGAAACTTGTCATAAGAAGTTTTCGCGGAAAAAGGGACTGGAGATTCATGTGAGGATCCATACGGGAGACAAGAGATGTGTGTGTCAGGAATGTGGGGAGGCGTTTGTGCAGACCACGAGTTTAAAGCTGCATTTGAGGGTGCATCACGACGCGATTGCGCAACCAAACGCCGCTGACACACAACGAATGAGGAAGTTACTGTGGCTGATCATACTAAACTCAACAGCAATGCCTTTTAGGAGGTGCGGCAACATATACAAATGTTTCTTCTGCTCTAAGACCTTCCACAAATCCAGTGATCTAAAGGTACACACGACAATCCATGACGATGCCAATCAGAGATTCAGAGTCGTGAGTAGATTCGATGGAAGGGCTTCTATCAAAGTGGACATTACTGAACTGAGATGTAGGCAATGCGATAAAGAATTCGACACTCTAAAAAATCTCCTCCGCCATCTAAAACAATCCCACAAGGAAAACATCGGCATGGAAGCGTTGAAGCACATAGACAGCTTCAAATTATCAGATAGCACACTAAAATGTCTGCTGTGCGATGAAACCTTCGAATATTTCAATCCTCTACTGCTGCATACGTTGAGGATCCATAAAATGAGGCCACTCATATGCAAGCTTTGTGGTGTAAGCTTTTCTACCAAACGCAGCATGGCCAGACATTTCCAAAGCGCACACGAAACCAACAGAACAACTTACAAGTGCACACACTGTAGTAAAAACTTCTCCGCTCCCCACAGACTAGACGACCACGAGAAGCGAATTCACAACATCAAAGCTCGAAAGTGCCATATCTGCGGAGAAGTCCTAGGCAGCACATCCATAAAGGCGAATCATTTGGCGAATGTCCACAACTTCAGGGTCGCGGAATTCAAATGCGAGAGCTGTCCCAAAATCTTCCGTCTCCAACACCAGTTAGCTATACATAACAGGAGAACGCACTTGAAAGAGAAAACTAAAGTTTGTGATGTGTGTGGCGAAAAATTCTTTGACAATAAGCTCCTCAGCTTGCACAAGGTTAGACACAGTGTAACCAAGTCTTTTGAATGTGATATTTGTAAAAAGAAGTTTTTGAGGAAGAAAGGGCTGGATATGCACGTGAGGATTCACACGGGTGACAAGAGATGTGTGTACCACAACATTGACCAAGAGGCCCGTAAGCGGGAGGAACTGGTCAAACTCCTCACCATTATCATAGAGAACTCAACGGTCTTACCCTTCAAATGGCACGCCAACGGTTTCATGTGCTTCTACTGTGGCTGCCCTTTCGCCGACTGTACCGAACTCAAACATCACACCAAGGCAGAGCACGAGGACGCCAAACTGAAAACAGTATTGAGGACAACTGTTGCCAAAAGCAGAAGCATTAAGCTTGATGTTTCAGAGCTCTCTTGCAAGAAATGCAAGGAACCTATGCGGAGTTTACAGGAGTTCTTCCTCCATATAGAACAACACGGTTTTAAAGTCGATAAGGAAGCGACGCACTGCTGTTATCCATTCATCCTTAAAGATCACGACTTGTCCTGTCTTGAATGCGGAGTGCTCTTCAGATTCTTTGGACCTCTTCTTATCCACACGCACAAATATCACAGCAAAACTGAGCCGTTCCTCTGTGAGATCTGCGGACAAGGCTTCATAGCGAAAGCTAATGTGGAAAGTCATCGAAAAGTGCATCGGAAACCAGCAACTTCTAATTACAATTGTAAAGAATGTAGCGAAACGTTCCCTACACAGTATAAACTAACGTATCATTTCGAAAAAGTCCACACGCCAACGAAATTCAAGTGTCCTAAATGTCCTGAGATCTTGGGTAGTAAATACTTGAAGAAACGGCATTTGGCTTTCGTACACGACATGAAAAGCGCACAGTTTCAATGCGATCAGTGCGAGAAGATATTCCCGTTGAAAAATAAGTTACTACAGCATAAGCTACGCGTCCACTTAAAGGAGAGAAACTTCGCCTGCGAAATTTGTGGTTTTAAAGTGTTTAGTAAAGATCTATTGAAGCGGCATATGGTGAAACATGACGATTCCCGACCGTTTGAGTGTGATTTCTGTAAGAAAACCTTTCAAAGGAAGAAGACTTTGGAGTTCCATAGAAGGATCCATACGAACGACAAAAGGTATCAGTGTAAAGATTGTGGAAGATCGTTTGTGCAGTGGACCAGCCTCAAGCTTCATATGAGAGTGCATCATTCGAGTAATAACGAGACTTGGACGTAG
- Protein Sequence
- MRKLLHQIMQNSTAMPFRRAGNIYKCFFCFNNYNRASDLKEHTKTHVDNNQKIRSVKRCGIKTIINVDITELRCKQCDEEFDGITNFLTHLQVDHKKKCDMDGLRYISCYKISDGDMKCLICDESFEYFYPLMLHTLRVHVVRRLKCEICGLSFGAKDSVAKHYKSVHETNPEAFKCRHCEKTFSAHHKRHDHEKRIHNEKAKKCPICGEILGSTFKKASHMASVHNKMATEFKCENCPKVFRLQNHLVKHNKRVHMKEKTKVCTVCGDKFFENRLLALHMVRHSDEKPFECETCHKKFSRKKGLEIHVRIHTGDKRCVCQECGEAFVQTTSLKLHLRVHHDAIAQPNAADTQRMRKLLWLIILNSTAMPFRRCGNIYKCFFCSKTFHKSSDLKVHTTIHDDANQRFRVVSRFDGRASIKVDITELRCRQCDKEFDTLKNLLRHLKQSHKENIGMEALKHIDSFKLSDSTLKCLLCDETFEYFNPLLLHTLRIHKMRPLICKLCGVSFSTKRSMARHFQSAHETNRTTYKCTHCSKNFSAPHRLDDHEKRIHNIKARKCHICGEVLGSTSIKANHLANVHNFRVAEFKCESCPKIFRLQHQLAIHNRRTHLKEKTKVCDVCGEKFFDNKLLSLHKVRHSVTKSFECDICKKKFLRKKGLDMHVRIHTGDKRCVYHNIDQEARKREELVKLLTIIIENSTVLPFKWHANGFMCFYCGCPFADCTELKHHTKAEHEDAKLKTVLRTTVAKSRSIKLDVSELSCKKCKEPMRSLQEFFLHIEQHGFKVDKEATHCCYPFILKDHDLSCLECGVLFRFFGPLLIHTHKYHSKTEPFLCEICGQGFIAKANVESHRKVHRKPATSNYNCKECSETFPTQYKLTYHFEKVHTPTKFKCPKCPEILGSKYLKKRHLAFVHDMKSAQFQCDQCEKIFPLKNKLLQHKLRVHLKERNFACEICGFKVFSKDLLKRHMVKHDDSRPFECDFCKKTFQRKKTLEFHRRIHTNDKRYQCKDCGRSFVQWTSLKLHMRVHHSSNNETWT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -