Edem038806.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia demarniana
Gene Symbol
-
Assembly
GCA_945869435.1
Location
CAMBUM010000874.1:220684-233315[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 0.024 2.4 10.3 1.0 1 23 134 156 134 156 0.98
2 18 0.013 1.3 11.1 0.5 1 19 179 196 179 197 0.95
3 18 0.00035 0.034 16.0 0.1 1 23 206 228 206 228 0.97
4 18 0.0001 0.0098 17.8 0.7 1 23 234 256 234 256 0.98
5 18 2.4e-05 0.0023 19.7 0.3 1 23 262 284 262 284 0.98
6 18 0.00057 0.056 15.4 3.0 3 23 291 312 290 312 0.90
7 18 0.0082 0.8 11.8 1.4 1 23 344 366 344 366 0.98
8 18 0.00072 0.07 15.1 3.3 1 23 394 415 394 415 0.98
9 18 0.0013 0.12 14.3 2.1 1 23 421 443 421 443 0.99
10 18 9.3e-06 0.00091 21.0 1.7 1 23 449 471 449 471 0.98
11 18 2.8e-07 2.7e-05 25.8 1.7 1 23 477 499 477 499 0.99
12 18 5.9e-07 5.7e-05 24.8 2.3 1 23 505 527 505 527 0.98
13 18 4.4e-06 0.00043 22.0 1.6 1 23 672 694 672 694 0.98
14 18 0.007 0.68 12.0 0.5 1 23 700 723 700 723 0.93
15 18 0.00011 0.011 17.6 0.2 1 23 729 751 729 751 0.98
16 18 2.4e-05 0.0023 19.7 1.4 1 23 757 779 757 779 0.98
17 18 9.1e-05 0.0089 17.9 0.5 1 23 785 808 785 808 0.96
18 18 8.6e-06 0.00084 21.1 1.7 1 23 814 836 814 836 0.98

Sequence Information

Coding Sequence
ATGCAGGGCGGCGGGGGTGGctacggcggcgcggcgcttgTGAAACAAGAGCCCGAGTGTGCTACGTTTACCTTCCAGATGACTTTAAAGGAGGAAGTAGAGCCGAAGGAGGAGCCCGAGTGTGCGAGTAGTGCAGGCTGTGAGAGCGAGACGGGCGCGCGCCtgtgcgccggcgccgcgcgcgtggTGAAGGACGAGCTCGAGCTGGGGCCGGCGCGCGTTCAGCACAAACCCAACATCCGCGgagtATCGCGCCTCTTGGTAATCGACGGCGAAGCGTGGCTCAAGCGCGGTGGTGTCACCCACCGCCAGCCCGCCGGGACCGCGTGCGCTGAACACGACACCGCGACACATGATACAATCACCGACACTCTTCAACACACGGCAGAGACGAATACTTACAATTGCGACACCTGCGGCCAAATATTTCTGCAGAAAGAATGTCTACTCGACCATGTTAAAGTTCACCTTCGGCAAGGACCATACATCTTACCAAACGACTCTTTGTTTATCTTCGAAccccatttaaataaatattcctgtaaaatatgtaaaaaaacgtACCGAGAGGATTACTTAAAGGTTCATGCGTGGTTTCACACAGGGGAGAAACCTTTCGCCTGCGCAGTATGCAATAAGCAGTTTGCTGTTTTGGACAGTTTGAAAGTTCATAAACGAATCCACACTAAAGAAAGACCTTACTCTTGTAATATGTGTGCAAAGAGCTTTGCTAGACGGGGAGGCTTAAAGACGCACAATCTAACCCACACGGGAGATAAGCCATTCTCGTGCGAAATATGTAAAAGAGAGTTCGCGCTTGCGGGGACATTGAAGACACATATACGAACTCATACCGGAGAGAAACCTTATTGTTGCATAATATGTAGCAAGCGGTTTACGCAATGGCGTGGTCTGGAGTCACATAAACGAACGCACCGCGAGCCCATTGGAACCACGGTCGCTGAACACGaaacaataaaacaatataCAATCACCGAGACCTTGCATCATACCATGGAGACACGTACTTACAAGTGCGACACTTGCGGGCAAATATTTCTGCAAAAACAATGTTTAATCGACCATGTAAAAGTACATCTCCGGGATGAATTAGGAACATTGCCAAATGAATCTATATTTACCCTCGAGCCCAGTGACACAACCACGAGTGCACAGAAATATTCCtgcaaaatatgtaaaaaaaagtacCGAAAGGATTACTTAAAGATTCATGTTCGGTATCACACAGGGGAGAAACCTTACACCTGTGAAGTGTGTAAGAAGCAGTTTGCTATTTTGCATTCTTTGAGACTACATAAACGAATCCACACTGAAGAAAGGCCTTATTCATGTAATCTTTGTGCAAAGACTTTCGCTAGGTCAAGCTATTTAAAAATACACAAACGTAGTCACACTGGAGAAAAACCATTCAAATGTGAAACATGTAATAAGGGATTCTCGCAATTAACTAATTTACAATCACATATACGAACACACACGGGAGAAACTCCTTTTTCTTGCACGATGTGTGACAAGCAGTTTGGGCAATGGAGCAATCTCAAGAGACATAAAAGGTCACACACTGTTGAAAAGCTATTCTCGCGCGTACATAAACATGAGGCAGTCAGCGTGAAGGAGAAGTCCGAGTGTGAGAGTAGTAAAGATCTGGGTGGGATGAGCGAGGAGACTCGCGTGAAGGAAGAACCTAAGCATGAGAGCAGTGCAGACACATGTGGAGTGAGCGAGACGGGTATAAGCATCGACCACGTAATTAAGGACGAGCTGGAGCTGGGACCGGAGGGCGTACAGTGGCGCGACATGCCCATCGCAACTCGCTCTGCATCGCCGCGCTGCGTGCTCTTCGCGACCACGAGTGGAACCTCCGGCGCCCAACAACCACCACTGCGGGAAATAAACACGACACACGATACTCTTCAAGTGAACACCGCAGGCACACATATCATGAAACAAAACCCGTTGACCACCAACGAACAGAACACGAGCAAAAGGCCATACGCCTgcgacacatgtaaaaaaacTTTTACGCAATCGGGCAGCTTGAACACTCACAAACGAATACACACGGGGGAGAAACCATACTCGTGTGAAgtatgtaacaaacaatttacTGCTCTCGCGACCTTCAATAATCATAAGATACAAGTGCATACACAAGTTAAGCCTTACGTCTGCGAGATCTGTAATAAAGGCTTCAAGCTATTACCGAGCTTGAAATCTCATGAACGAATACACACGCGAGGCAAACCATTCCCCTGTGATATATGTAAAAAACAGTTCCGTCACGAGAGTGCTCTGAGGGTTCACAACCGAATACACACGGGAGTTAAGCCGTATTCCTGTCCAATATGTAAACAACAGTTCAGGCAAAATGGCAGTATGAAGGCGCATATAGTCCGCAGGCACACTGCAGAAAAGCCATTTACCTGcgaaatatgtaaaaaacagTTCTACACCAAGGGGAACTTAAAGTACCATATAGGAACCCACGCAAAAGCAGAATATTAG
Protein Sequence
MQGGGGGYGGAALVKQEPECATFTFQMTLKEEVEPKEEPECASSAGCESETGARLCAGAARVVKDELELGPARVQHKPNIRGVSRLLVIDGEAWLKRGGVTHRQPAGTACAEHDTATHDTITDTLQHTAETNTYNCDTCGQIFLQKECLLDHVKVHLRQGPYILPNDSLFIFEPHLNKYSCKICKKTYREDYLKVHAWFHTGEKPFACAVCNKQFAVLDSLKVHKRIHTKERPYSCNMCAKSFARRGGLKTHNLTHTGDKPFSCEICKREFALAGTLKTHIRTHTGEKPYCCIICSKRFTQWRGLESHKRTHREPIGTTVAEHETIKQYTITETLHHTMETRTYKCDTCGQIFLQKQCLIDHVKVHLRDELGTLPNESIFTLEPSDTTTSAQKYSCKICKKKYRKDYLKIHVRYHTGEKPYTCEVCKKQFAILHSLRLHKRIHTEERPYSCNLCAKTFARSSYLKIHKRSHTGEKPFKCETCNKGFSQLTNLQSHIRTHTGETPFSCTMCDKQFGQWSNLKRHKRSHTVEKLFSRVHKHEAVSVKEKSECESSKDLGGMSEETRVKEEPKHESSADTCGVSETGISIDHVIKDELELGPEGVQWRDMPIATRSASPRCVLFATTSGTSGAQQPPLREINTTHDTLQVNTAGTHIMKQNPLTTNEQNTSKRPYACDTCKKTFTQSGSLNTHKRIHTGEKPYSCEVCNKQFTALATFNNHKIQVHTQVKPYVCEICNKGFKLLPSLKSHERIHTRGKPFPCDICKKQFRHESALRVHNRIHTGVKPYSCPICKQQFRQNGSMKAHIVRRHTAEKPFTCEICKKQFYTKGNLKYHIGTHAKAEY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-