Edem039998.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000920.1:71224-78734[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 1.9 1.9e+02 4.3 1.0 2 23 20 42 19 42 0.93 2 31 0.043 4.2 9.5 0.1 1 23 49 72 49 72 0.94 3 31 0.043 4.2 9.5 0.1 1 23 112 135 112 135 0.94 4 31 0.043 4.2 9.5 0.1 1 23 175 198 175 198 0.94 5 31 0.043 4.2 9.5 0.1 1 23 238 261 238 261 0.94 6 31 0.043 4.2 9.5 0.1 1 23 301 324 301 324 0.94 7 31 0.043 4.2 9.5 0.1 1 23 385 408 385 408 0.94 8 31 0.043 4.2 9.5 0.1 1 23 448 471 448 471 0.94 9 31 0.043 4.2 9.5 0.1 1 23 511 534 511 534 0.94 10 31 0.043 4.2 9.5 0.1 1 23 574 597 574 597 0.94 11 31 0.043 4.2 9.5 0.1 1 23 637 660 637 660 0.94 12 31 0.043 4.2 9.5 0.1 1 23 700 723 700 723 0.94 13 31 0.043 4.2 9.5 0.1 1 23 763 786 763 786 0.94 14 31 0.043 4.2 9.5 0.1 1 23 826 849 826 849 0.94 15 31 0.043 4.2 9.5 0.1 1 23 889 912 889 912 0.94 16 31 0.043 4.2 9.5 0.1 1 23 952 975 952 975 0.94 17 31 0.043 4.2 9.5 0.1 1 23 1015 1038 1015 1038 0.94 18 31 0.043 4.2 9.5 0.1 1 23 1078 1101 1078 1101 0.94 19 31 0.043 4.2 9.5 0.1 1 23 1141 1164 1141 1164 0.94 20 31 0.043 4.2 9.5 0.1 1 23 1204 1227 1204 1227 0.94 21 31 0.043 4.2 9.5 0.1 1 23 1267 1290 1267 1290 0.94 22 31 0.043 4.2 9.5 0.1 1 23 1330 1353 1330 1353 0.94 23 31 0.043 4.2 9.5 0.1 1 23 1393 1416 1393 1416 0.94 24 31 0.043 4.2 9.5 0.1 1 23 1456 1479 1456 1479 0.94 25 31 0.043 4.2 9.5 0.1 1 23 1519 1542 1519 1542 0.94 26 31 0.043 4.2 9.5 0.1 1 23 1582 1605 1582 1605 0.94 27 31 0.043 4.2 9.5 0.1 1 23 1645 1668 1645 1668 0.94 28 31 0.043 4.2 9.5 0.1 1 23 1708 1731 1708 1731 0.94 29 31 0.043 4.2 9.5 0.1 1 23 1771 1794 1771 1794 0.94 30 31 0.043 4.2 9.5 0.1 1 23 1834 1857 1834 1857 0.94 31 31 0.043 4.2 9.5 0.1 1 23 1897 1920 1897 1920 0.94
Sequence Information
- Coding Sequence
- ATGATACTAGCATTGCTGAAGTATACAATATGTCGTTGCAACACGCGGCTTGTGTTGCAGTGCTCGCTGTGCTCGAAGCGCGAGAAGTCGCGGAAGCTGCTGCAAGTGCACGTGTTTAAAGCACATCGCGAGAAGCGATACAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGTCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCCCACGGCGTGCCGCGCGGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCACCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACTTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACTGTCGCCCTCGCGTatccgagcgacagagagggagatccgTTGTCCGTCACGGCCGCCCCGCGCCCGCAGGTACTTGTGCCCGGCGTGCGGCGACACGTTCACGCGGCCCGGCAACGCGCGGCAACACCTCGCGCGCAGCCACGGCGTGCCGCGCGCCGACCAGCCCGCCATCGCCCGCTGCCAGGTACACAGCAACTTCAGCGAATATGTCCCGCCCCGGCTCCGCTCCTACTTATGA
- Protein Sequence
- MILALLKYTICRCNTRLVLQCSLCSKREKSRKLLQVHVFKAHREKRYRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHVVPRADQPAIARCQVLSPSPTACRAADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVLSPSRIRATEREIRCPSRPPRARRYLCPACGDTFTRPGNARQHLARSHGVPRADQPAIARCQVHSNFSEYVPPRLRSYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -