Edem036525.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000789.1:75867-112589[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.015 1.4 10.9 0.3 1 23 145 168 145 168 0.92 2 28 8 7.8e+02 2.3 0.2 5 23 293 311 292 311 0.90 3 28 4.3e-05 0.0042 18.9 2.5 1 23 345 367 345 367 0.96 4 28 4.9 4.8e+02 3.0 0.1 5 23 461 479 460 479 0.90 5 28 7.9e-05 0.0077 18.1 2.3 1 23 569 591 569 591 0.98 6 28 4.7 4.6e+02 3.1 0.1 5 23 629 647 628 647 0.89 7 28 4.8e-05 0.0046 18.8 0.2 1 23 689 711 689 711 0.98 8 28 0.00037 0.036 16.0 4.8 1 23 748 770 748 770 0.97 9 28 0.00022 0.021 16.7 0.2 1 23 878 900 878 900 0.97 10 28 2.2 2.2e+02 4.1 5.0 1 23 912 934 912 934 0.97 11 28 9.1e-05 0.0089 17.9 0.3 2 23 938 959 937 959 0.97 12 28 0.002 0.2 13.7 6.3 1 21 965 985 965 987 0.95 13 28 0.037 3.6 9.7 0.2 1 23 992 1014 992 1014 0.91 14 28 0.00019 0.018 16.9 0.2 1 23 1040 1062 1040 1062 0.97 15 28 0.0051 0.5 12.4 1.6 1 23 1151 1174 1151 1174 0.92 16 28 1.9 1.9e+02 4.3 1.7 1 23 1199 1221 1199 1221 0.91 17 28 2.9e-05 0.0028 19.5 3.4 2 23 1232 1253 1231 1253 0.97 18 28 0.02 1.9 10.5 2.5 1 23 1259 1281 1259 1281 0.97 19 28 8.3e-06 0.0008 21.2 4.8 1 23 1287 1309 1287 1309 0.98 20 28 6e-06 0.00059 21.6 2.8 1 23 1317 1339 1317 1339 0.97 21 28 6.1e-05 0.0059 18.5 1.2 1 23 1345 1367 1345 1367 0.98 22 28 4.2e-05 0.0041 19.0 1.9 1 23 1373 1395 1373 1395 0.98 23 28 1.9e-06 0.00019 23.2 3.1 1 23 1410 1432 1410 1432 0.97 24 28 9e-06 0.00087 21.1 1.1 1 23 1438 1460 1438 1460 0.97 25 28 0.0034 0.33 13.0 1.8 1 23 1466 1488 1466 1488 0.97 26 28 0.00023 0.022 16.6 3.8 1 23 1494 1517 1494 1517 0.96 27 28 0.00027 0.027 16.4 3.6 1 23 1523 1545 1523 1545 0.96 28 28 2.9e-06 0.00028 22.6 1.3 1 23 1551 1573 1551 1573 0.98
Sequence Information
- Coding Sequence
- ATGGAAGCGCTGCACTCGTGTCGCTGTTGCCTGAGGCGCCCCCCAGACAAGGGTCTCAAGACGCTATACGAAAATGTCGGCAAAACGGAGAATTACTGGGACATGCTTAAAGAATGCTTCAATATacatCTGAATGTGGGGAATGATGAGTGCGGTATCTGTGAGGTGTGCGTGGCCCGGCTGCGAGATGCAACTGAATTCAAGATGCAAGTGCAGCAGAGCCAGGTGGAGCTTAAAGCACTGCTCGAGAAAGCTTTACAAGAAAAGGaaaaaaaaccaTCTTTAATAAAGGTCGAGCTAGTTGAGGAGGACCCCAATGTTGAGGAGGTTATGATACACGTACTGTTCCACGTAGAGGCAACATACGAGGAGGACGCTTGGCCGCAACCTCAGATCAATGTGGCTTGGCAGGAATCTGAAAGCGATTCGCCTTACGAGTGCCAAGCGTGTCAAAAGAAATTCGACCTCGAAGAAAGCCTCACAAGGCACATTTTCGCTGTGCATTCCAAACATGAATTTCCTACTAATAGAAAAATTTACACATGCAGTTTTTGCTGCGAATGGTTTACGCTCCAAAGCTTATTATCTAGCGGAGAATCATCCGACGCGGAGTCAGTTACGTCGGAATTTGAACACAATAATTCGCCATTCAATTGTCAGAAACGGCTGAAAACACTCGCGCTTCAAGCTAATCTCGCCAAGCATATGGAACGTCTGAAAACAATCGCCAATCGAGCTAATCTCGCCAAACACAAGGCTTTGCATGCTAAAGGCAGCGTTGCCAGCGAGACTAAAGCTCTGTCTGGCGGAGACTCATCCGATGCCGAGTCAGTTATGTCGGAATCTGAAGACAACAATTCGCAAACCAAATCTCAGGAATGTCACGCGACATTCGACCTTGGACTCAGTCTCACTAAACACATGGATGTGCATGCTATCGGTAGCGTTGCCACCGAGACAGAAACTCTGCTTTGCGGAGAGTCATCCGATGCAGAGTCTGTTATATCGGAATATGAAGACAATAATTCGCCGTTCAAATGTCAGGAATGTCAGAAAACATTTGACCTTAAAAACAATCTCACCAAACATATGGCTTTTCATGCTAAAGGTAGCGTAGCCACCGAGACGAAAACTCTGTCTAGCGGAGACTCATCCGATGCAGAGTCAGTTATATCGGAATCTGAAGACAACAATTCGCCAATCAAATCGCAGAAATGTGAGGAGTCATTCGAACTTGGGGACAGTCTCACCAAACAGATGGATGTGCATGCTAGAGGCAGCGTTGCCACCGAGACGAGAACTCTGTCTAACGGAGACTTATCCGATGCGGAGTCAGTTATGTTGGAATCTGAAGACAACAATTCGCCAATCCAATATCAGGAATGTCAGAAGACATTGGACCTTGGAGCCAGTCTCACCAAACATATGGATGTGCATGCTAGAGGCAGCGTTGCCACCGAGACGAAAACTCTGTCTAGCGGAGACTCGTCCGATGCGGAGTCTGTGATGTCGAAAACTGAAGACAACGATTCACCAATCAAATCTCAAGAATACCAGGAAACATTCTACCTTAAAGACAGTCTCACCAAACGCATAGCTGTGCATGCTATCGGTACCGTTGCCACCGAGACTAAAACTTTGCTTAGCGGAGAGTCATCCCATGCAAAGTCAAGTACGTTGGAACCTGATGACAATAATTCCCTGTTCAAATGTCAGGAATGTCAGAAAACATTTGACCTTGAACACAGTCTCACCAAGCATATGGCTGTGCATGCTATCGGCAGCATTGCCACCGGAACGGAACCTCTGCTTAGCGAAGAGTCACCCAATGCGGAGTCAGTTATGTCGGAATCTGAAGAGAATAATTCGCCGTTCAAATATCAGGAATGTCAGGATACATTCGACCTTGAAGACTGTCTCACCAAACATATGGCTGTGCATGCTGAAAGTAGCGCTACCACAGAAATTAAAACTCATATGTGCGGTGTATGTTGCGAAATATCCAACGGAGAGTCATCCGACGCGGAGTCAGGTACGTCGGAATCTGAAGACAATAATTCGCCGTTCAAATGTCAGGAATGTCCGAAAACTTTTGACAATGAAGACAGCGCCATCAAACATATGATTGTTCATGCTAAAGAATTGGAGACGTATATGTGCAATATTCACAATCAGCTCGTAACCGAGAGTGGATTACGTGTAAAAATTTTGAGAAAGGAAACCAGCTCAAAAGAGAAACGCTTTTCCTGCGAAGTATGCAACAAACAGTTTGGACTTAAACATCATTTGACACGTCATATGAAAGGTCACCCGGAGTATCAACGCTCTAAGGAGTTGACAGAGCAATCTCAGAAGAAAGCACTAGAAGCACAAGAGGATCATAACAAGACTATACTAGACAGCAAAGTAAGTACACCACTTCTTACAGGCTTATTGTCTAGCGGAGAGTCATCCGACGCGGAGTCAGGTACGTCGGAATGTGAAGACAATATGCCGATCGAACGTCAGGAACGTCAGAAACCAATCGACGTAGAAGACGGTGTCATCAAAGGTAACATTGCCACCGAAACGATAACTCTAACATCCGATGCGGAGTCAGCTATATCGGAATCTGAACACAATAATTCGCTGTTCAAATGTCAGGAATGTCAGAAAACATTCGACCTTGAAGACAGTCTCATCAGTCATATGGCTGCGCATACTAATGGCAGCGTCGCCTCTAAGACGATAACTCATGTATGCAGAATTTGTTGTAAATGTTTTGAACTAACCGCTGATTTTATCAAGCATATGGAAATACACAGTGATTTGCGGTGTGGTTTATGTAAAAAGATATTGGCAAATCGAAGCAGCTTACGAGCTCACATGAGAATTCACTCTGGAGAAAAACTTTACTCCTGTGAAGTATGCGACAAAAAGTTTGGACAAAAACAACATATGAAAAGGCATATGAAATGTCACAAGGGAGATGCATTCCTTTGCCAAAGATGCCCTAAGAAATTCACAGCGCTAGCTCAATTGAAGGAGCATGAAGTAGTGCATATAGAGAAAAGACCTGATTCATGTGAAAATACAATAACGGCTGATTTTACCAAGCATATGGAAAAACACGATGCTTTTCAGTGTGATTTATGTAAAAAGGTATTGGCAACTCCAAGCACCTTACAGTATCACATGGGAATTCACACGCTAGAAAAACCTTATTGCTGTGAGTTATGTGACAAAAAGTTTGGAAATATACTTATTTTGAAAAGGCATATGAGATGTTGTCACAGGGGTGAGGATCAACGCCAAATATCCTCTAAGAAGATCGCAGAGCAATCTCACTTGAAGGAGCATGTAGTAGAACATGTAGAAGAAAATGTGGAAGACGGTGTCATCAAAGAGTTATTATTCAGCGCAACATCGACAGCCGCGCTAAAACCAATCGAGACCGGCGGCATGCCGCCCTACAACTGCCGCGCATGTCACAAGCAATTCGACCAGGAGGAGAGTCTCACCAGACACATGTTCGCTATCCACGCTAAACACGAACTACAATCCAAGGTCGAAGTAAACGAAGATCCTATCGAAGCCCCtactaagaaaaaaatacacccaTGCGAAGTTTGCTGTCAATGGTTCACACTGAAAACTGACCTCGAAAAGCACATGGAGGTTCACAAGGTGATCCCCAATGAAAACGACGATTTGACCTGCGAAACGTGCGAAAGACAATTCTCTGACAGATCCCATTTGAACAGACACCAGCAATCACATGGGACACGAGACAATTACAACTGTGAACTGTGCGCAAAGCATTTTAAAAGTTATAACGGTTTGAAGATGCATAAgatgatacatactggtgagaaGCCATACGAATGTCAAGTATGCCAGAAGAAATTCAGACATAAAAGCCACTTGACTGCTCACCAAGAAATTCACATGGAGAACAGGCAATATAAATTCTTCTGTTCGGTGTGCAAGAAGAAGTTTGCCCAAAAATCCTCCTTGAAGCTTCATATGCGTTTACATACCGGAGAAAAACCTTATACCTGTGACATATGTAGCAAACCGTTTGCTTTTAGGTCCACCTTGAATGCCCACAAGCGTTTCCACACAGGAGAGAAACCATACACGTGTGAAGTCTGCCGGAAACAATTCACTCTAAAAAGTTCTTTGAACAAGCATTTACTTTCCCATGCAGATGTTCTTGATTTACCATCTGCTGCTACCGATGAATCTTTCTGTTGCGAAATATGTGGAAAGCGGTTTAGACAAAAAAGCTATTTGGCCAGACATCTGAAAGCTCACATGGGAATCAAGCCATATTTCTGTGAAATATGCAACAAGCGATTTGGCCAAAAAGGCAACTTGCGAGCTCACAAGAAGATCCACACTGGAGAGAAGTCTTTCGCTTGCGAAATATGTCGTAAGCGATTTGGTACGAAAGCTAATTGCAAGAACCACATGATCATACACACTGGGCAGAAACCACACTCGTGTAAAATATGCAATAAGCAATTTTCGTATAAATGCGCTTTGAACGTTCATATCAAAGTTATTCACTTCAGAGAGAAACCACATATATGCCATATATGCAAAAGGTCATTTGCATTGTTGTCTACATTGAAAAAGCATATATTGAGTCACACAGGAGAGCGGCCTTTCTCATGCCATGTCTGCGGCAAAGCTTTTACAGTGAAGTATGGATTGAAGAAGCATCTGTTAATCCACAACAGGCACCATTAG
- Protein Sequence
- MEALHSCRCCLRRPPDKGLKTLYENVGKTENYWDMLKECFNIHLNVGNDECGICEVCVARLRDATEFKMQVQQSQVELKALLEKALQEKEKKPSLIKVELVEEDPNVEEVMIHVLFHVEATYEEDAWPQPQINVAWQESESDSPYECQACQKKFDLEESLTRHIFAVHSKHEFPTNRKIYTCSFCCEWFTLQSLLSSGESSDAESVTSEFEHNNSPFNCQKRLKTLALQANLAKHMERLKTIANRANLAKHKALHAKGSVASETKALSGGDSSDAESVMSESEDNNSQTKSQECHATFDLGLSLTKHMDVHAIGSVATETETLLCGESSDAESVISEYEDNNSPFKCQECQKTFDLKNNLTKHMAFHAKGSVATETKTLSSGDSSDAESVISESEDNNSPIKSQKCEESFELGDSLTKQMDVHARGSVATETRTLSNGDLSDAESVMLESEDNNSPIQYQECQKTLDLGASLTKHMDVHARGSVATETKTLSSGDSSDAESVMSKTEDNDSPIKSQEYQETFYLKDSLTKRIAVHAIGTVATETKTLLSGESSHAKSSTLEPDDNNSLFKCQECQKTFDLEHSLTKHMAVHAIGSIATGTEPLLSEESPNAESVMSESEENNSPFKYQECQDTFDLEDCLTKHMAVHAESSATTEIKTHMCGVCCEISNGESSDAESGTSESEDNNSPFKCQECPKTFDNEDSAIKHMIVHAKELETYMCNIHNQLVTESGLRVKILRKETSSKEKRFSCEVCNKQFGLKHHLTRHMKGHPEYQRSKELTEQSQKKALEAQEDHNKTILDSKVSTPLLTGLLSSGESSDAESGTSECEDNMPIERQERQKPIDVEDGVIKGNIATETITLTSDAESAISESEHNNSLFKCQECQKTFDLEDSLISHMAAHTNGSVASKTITHVCRICCKCFELTADFIKHMEIHSDLRCGLCKKILANRSSLRAHMRIHSGEKLYSCEVCDKKFGQKQHMKRHMKCHKGDAFLCQRCPKKFTALAQLKEHEVVHIEKRPDSCENTITADFTKHMEKHDAFQCDLCKKVLATPSTLQYHMGIHTLEKPYCCELCDKKFGNILILKRHMRCCHRGEDQRQISSKKIAEQSHLKEHVVEHVEENVEDGVIKELLFSATSTAALKPIETGGMPPYNCRACHKQFDQEESLTRHMFAIHAKHELQSKVEVNEDPIEAPTKKKIHPCEVCCQWFTLKTDLEKHMEVHKVIPNENDDLTCETCERQFSDRSHLNRHQQSHGTRDNYNCELCAKHFKSYNGLKMHKMIHTGEKPYECQVCQKKFRHKSHLTAHQEIHMENRQYKFFCSVCKKKFAQKSSLKLHMRLHTGEKPYTCDICSKPFAFRSTLNAHKRFHTGEKPYTCEVCRKQFTLKSSLNKHLLSHADVLDLPSAATDESFCCEICGKRFRQKSYLARHLKAHMGIKPYFCEICNKRFGQKGNLRAHKKIHTGEKSFACEICRKRFGTKANCKNHMIIHTGQKPHSCKICNKQFSYKCALNVHIKVIHFREKPHICHICKRSFALLSTLKKHILSHTGERPFSCHVCGKAFTVKYGLKKHLLIHNRHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -