Edem041404.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia demarniana
Gene Symbol
-
Assembly
GCA_945869435.1
Location
CAMBUM010000983.1:105529-113003[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.00013 0.012 17.4 0.8 1 23 104 126 104 126 0.99
2 22 0.011 1.1 11.3 4.0 1 23 152 173 152 173 0.97
3 22 0.00017 0.017 17.0 0.4 1 23 179 201 179 201 0.99
4 22 0.00051 0.05 15.5 4.4 1 23 207 229 207 229 0.98
5 22 0.00014 0.014 17.3 5.9 1 23 235 257 235 257 0.99
6 22 6.8e-07 6.6e-05 24.6 1.5 1 23 263 285 263 285 0.98
7 22 7.4e-05 0.0072 18.2 4.6 1 23 318 340 318 340 0.95
8 22 0.00013 0.012 17.4 0.8 1 23 470 492 470 492 0.99
9 22 0.011 1.1 11.3 4.0 1 23 518 539 518 539 0.97
10 22 0.00017 0.017 17.0 0.4 1 23 545 567 545 567 0.99
11 22 0.0012 0.11 14.4 3.3 1 23 573 595 573 595 0.98
12 22 0.00014 0.014 17.3 5.9 1 23 601 623 601 623 0.99
13 22 6.8e-07 6.6e-05 24.6 1.5 1 23 629 651 629 651 0.98
14 22 7.4e-05 0.0072 18.2 4.6 1 23 684 706 684 706 0.95
15 22 1.1e-06 0.00011 23.9 1.0 1 23 843 865 843 865 0.99
16 22 0.002 0.2 13.7 0.6 1 23 871 894 871 894 0.92
17 22 5.4e-06 0.00053 21.8 1.4 1 23 900 922 900 922 0.98
18 22 0.00026 0.025 16.5 1.9 1 23 928 950 928 950 0.97
19 22 0.00022 0.021 16.7 0.4 1 23 956 979 956 979 0.95
20 22 0.00019 0.019 16.9 4.1 1 23 985 1007 985 1007 0.98
21 22 0.0012 0.12 14.4 1.1 1 23 1013 1036 1013 1036 0.96
22 22 3.3 3.2e+02 3.6 0.0 5 17 1046 1058 1045 1059 0.92

Sequence Information

Coding Sequence
ATGACGTTTATGCAATTGGGTGCTTTGCATGTTCATGAACTCATTCACACGGAAGAAAAGGGCACCCAGTTGTGCACCCAAGTGACTAAGGACAAGCTCGTGCTTGGACTGGGACATAGGCAGCGGCCGAACACAGTCAATGCCCTTGGTGAAAAATCGCGGTCTGAGGTTCGAGACTACGGGCCTGCACTCGACCGCTGCGCCGTCACAGCCCACGATGAGCCCGCCGGGACCACGGGCGCTGAACACGAAACCGTACAACAAAATACTTTCACCGACATCACGCATCATACCCCGGAGACACATGCTTACAAGTGCAACACCTGCGGAAAAATATTCCTGCAAAAACAATATCTAATCGACCATATTAAAGTACATCTTCTGGAAGCATCAGAAACATTACCAAACGAGTCTATATTTACCTTCGATCCCAGTGAGAcgagtgtaaaaaaatatacctgcAGAATATGTACTAAAAAGTTCCGAAAGAATTACTTGAAGATTCACGAGCGGTTTCATACAGGGGAGAAACCTTACACCTGTGAAGTATGTAAGAAGCAGTTTGCTGTTTTGGGCAGTTTGAGAGAACATAAACGAATTCACACTGGCGAAAGGCCTTATTCATGTAATTTATGTACAAAGAGCTTCACTTTATTGAACCATTTAAAAACCCACCAAAGCAGTCACACAAgagaaaaaccatacaaatgtgaaaCGTGTCACAAGGGATTCACGCTATTATGTAATTTACGATCACACATACGAACACACACGGGAGAAACCCCGTATTCCTGCACGATGTGTGACAAGCAGTTCACGCAATGGAGCGCTCTCAATAACCATAAACGGTCACACACAGGCGATAAAACCTATCCGTGTGACATAAGTAATAAAAAGTTTAAACAGGGTGCTTCAAATGTCCATAAAGTCATCCACACGATTGAAAAGCCGTTCTTGTGCGAAACGTGTAAGAAGACTTTCAGAAAAAAGAGCACTTTAGAAAATCATAAACGTAAGCATGAGTTAGTCAGCTTGAAGGAGAAATCCAAGTGTGAGAGCAGTACAGACCCATGCGGATCGAGCCAGACGCATGAGGAGCCACGCGTGAAGGAAGAACCTAAGTGTGAGAGCTCTGCAGACTCATGTAGAGTGAGCGAGACGGCTGCAGGCGTCGACTACGTCATTAAAGACGAGCTGGAGCTGGGACCGGAAGGCGTACAGCTTCGCGACATAACTCTCACGCCTCGCGaaacatcGCGGTCTGAGGTTCGAGACTACGGGCCTGCACTCGACCGCTGCGCCGTCACAGCCCACGATGAGCCCGCCGGGACCACGGGCGCTGAACACGAAACCGTACAACAAAATACTTTCACCGACATCACGCATCATACCCCGGAGACACATGCTTACAAGTGCAACACCTGCGGAAAAATATTCCTGCAAAAACAATATCTAATCGACCATATTAAAGTACATCTTCTGGAAGCATCAGAAACATTACCAAACGAGTCTATATTTACCTTCGATCCCAGTGAGAcgagtgtaaaaaaatatacctgcAGAATATGTACTAAAAAGTTCCGAAAGAATTACTTGAAGATTCACGAGCGGTTTCATACAGGGGAGAAACCTTACACCTGTGAAGTATGTAAGAAGCAGTTTGCTGTTTTGGGCAGTTTGAGAGAACATAAACGAATTCACACTGGCGAAAGGCCTTATTCATGTAATTTATGTGCAAAGAGCTTCACTTTATTGAACCATTTAAAAACCCACCAAAGCAGTCACACAAgagaaaaaccatacaaatgtgaaaCGTGTCACAAGGGATTCACGCTATTATGTAATTTACGATCACACATACGAACACACACGGGAGAAACCCCGTATTCCTGCACGATGTGTGACAAGCAGTTCACGCAATGGAGCGCTCTCAATAACCATAAACGGTCACACACAGGCGATAAAACCTATCCGTGTGACATAAGTAATAAAAAGTTTAAACAGGGTGCTTCAAATGTCCATAAAGTCATCCACACGATTGAAAAGCCGTTCTTGTGCGAAACGTGTAAGAAGACTTTCAGAAAAAAGAGCACTTTAGAAAATCATAAACGTAAGCATGAGTTAGTCAGCTTGAAGGAGAAATCCAAGTGTGAGAGCAGTACAGACCCATGCGGATCGAGCCAGACGCATGAGGAGCCACGCGTGAGGGAAGAACCTAAGTGTGAGAGCTCTGCAGACTCATGTAGAGTGAGCGAGACGGCTGCAGGCGTCGACTACGTCATTAAAGACGAGCTGGAGCTGGGACCGGAAGGCGTACAGCTTCGCGACATAACTCTCACGCCTCGCGCCGCGTCGCCGCGCGGCGAGCTCCTCGCGACCACGAGCGGAGCACCCAGTGCCCGCGGACCTGCGCCGCCGCGGGAAGCTAACACGACACACGACACTCTTCAAGCGGCGGCCGCGGGGACACCTGTCATTAAACTAAACCGTTCGACCACCAACAATCAAACCACGAGCGAAAGGCCATACACCTGCGACATATGTAAAAAAGCCTTCACGCAATCGGGGAGTCTGAACACCCACAAACGAATACATACGGGAGAAAAACCATACTCATGTAAATTATGTAACAAGAAATTTACTGCACTCGCTACTTTGAATAATCATAAAATTGCACTGCATACATACATCAAACCTTACTCCTGTGAGATATGTAATAAACGCTTCAAGACATTAGCGAGCTTGAAATCTCATGGACGCAGGCACGTGGCAGGCAAACCATTCTCTTGTGATATATGTAAAAAACAGTTCCGTAACATGATTACTCTGAAGAGACATAAACTAATACATGCAGGAGTGAAGCCGTATTCTTGTGAAATATGCAAACAACAGTTCAGGCAAAAAAGCGGTGTGAAGGCGCATATAATTAACATGCACGTAGGAGAAAAGCCTTTCTCCTGCGAAATATGTAAAGAACAGTTCTGTCATAAGAGTGCTTTGAAGGCACATAACCGAGTACATACGGGAGCAAAGTCGTATTCTTGTGAAATATGTAAACAACAGTTCAGTCGGAAGGATGTTATGGAGAAACATGTACTCCGCAAGCATACAGGAGAAAAGCCGTTATCCAGCGAAATATGTAAAAGACAGTTCGCCACCAAAGAAAACTTACAGTACACTCAGCAGCATAAATAG
Protein Sequence
MTFMQLGALHVHELIHTEEKGTQLCTQVTKDKLVLGLGHRQRPNTVNALGEKSRSEVRDYGPALDRCAVTAHDEPAGTTGAEHETVQQNTFTDITHHTPETHAYKCNTCGKIFLQKQYLIDHIKVHLLEASETLPNESIFTFDPSETSVKKYTCRICTKKFRKNYLKIHERFHTGEKPYTCEVCKKQFAVLGSLREHKRIHTGERPYSCNLCTKSFTLLNHLKTHQSSHTREKPYKCETCHKGFTLLCNLRSHIRTHTGETPYSCTMCDKQFTQWSALNNHKRSHTGDKTYPCDISNKKFKQGASNVHKVIHTIEKPFLCETCKKTFRKKSTLENHKRKHELVSLKEKSKCESSTDPCGSSQTHEEPRVKEEPKCESSADSCRVSETAAGVDYVIKDELELGPEGVQLRDITLTPRETSRSEVRDYGPALDRCAVTAHDEPAGTTGAEHETVQQNTFTDITHHTPETHAYKCNTCGKIFLQKQYLIDHIKVHLLEASETLPNESIFTFDPSETSVKKYTCRICTKKFRKNYLKIHERFHTGEKPYTCEVCKKQFAVLGSLREHKRIHTGERPYSCNLCAKSFTLLNHLKTHQSSHTREKPYKCETCHKGFTLLCNLRSHIRTHTGETPYSCTMCDKQFTQWSALNNHKRSHTGDKTYPCDISNKKFKQGASNVHKVIHTIEKPFLCETCKKTFRKKSTLENHKRKHELVSLKEKSKCESSTDPCGSSQTHEEPRVREEPKCESSADSCRVSETAAGVDYVIKDELELGPEGVQLRDITLTPRAASPRGELLATTSGAPSARGPAPPREANTTHDTLQAAAAGTPVIKLNRSTTNNQTTSERPYTCDICKKAFTQSGSLNTHKRIHTGEKPYSCKLCNKKFTALATLNNHKIALHTYIKPYSCEICNKRFKTLASLKSHGRRHVAGKPFSCDICKKQFRNMITLKRHKLIHAGVKPYSCEICKQQFRQKSGVKAHIINMHVGEKPFSCEICKEQFCHKSALKAHNRVHTGAKSYSCEICKQQFSRKDVMEKHVLRKHTGEKPLSSEICKRQFATKENLQYTQQHK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-