Basic Information

Insect: Epinotia demarniana
Gene Symbol: -
Assembly: GCA_945869435.1
Location: CAMBUM010000117.1:425775-432018[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.00051 0.049 15.5 0.0 3 23 9 29 7 29 0.97

2 20 0.00016 0.015 17.2 2.3 3 23 37 57 36 57 0.97

3 20 6.4e-05 0.0062 18.4 2.1 1 23 63 85 63 85 0.97

4 20 0.0054 0.53 12.3 5.4 1 23 91 113 91 113 0.97

5 20 2.3e-05 0.0023 19.8 1.8 2 23 133 154 132 154 0.97

6 20 4.9e-06 0.00048 21.9 0.5 1 23 160 182 160 182 0.98

7 20 6.6e-06 0.00064 21.5 0.2 2 23 186 207 186 207 0.98

8 20 9.3e-07 9.1e-05 24.2 0.8 1 23 213 235 213 235 0.98

9 20 1.2e-05 0.0012 20.6 2.4 1 23 241 264 241 264 0.98

10 20 0.00026 0.025 16.5 6.1 2 23 408 429 407 429 0.97

11 20 3.3e-06 0.00032 22.4 2.3 2 23 434 455 434 455 0.97

12 20 2.6e-06 0.00025 22.8 1.0 1 23 461 483 461 483 0.98

13 20 3.6e-05 0.0035 19.2 1.7 1 23 489 511 489 511 0.98

14 20 1.8e-06 0.00017 23.3 0.5 1 23 517 539 517 539 0.98

15 20 1e-05 0.00097 20.9 2.6 1 23 545 567 545 567 0.97

16 20 1.3e-06 0.00013 23.7 1.8 1 23 573 595 573 595 0.96

17 20 1.4e-05 0.0014 20.4 4.8 1 23 601 623 601 623 0.98

18 20 0.00032 0.031 16.2 1.3 1 23 641 663 641 663 0.98

19 20 6.2e-06 0.0006 21.6 2.3 1 23 669 691 669 691 0.98

20 20 3.7e-06 0.00036 22.3 4.1 1 23 697 719 697 719 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.00051	0.049	15.5	0.0	3	23	9	29	7	29	0.97
2	20	0.00016	0.015	17.2	2.3	3	23	37	57	36	57	0.97
3	20	6.4e-05	0.0062	18.4	2.1	1	23	63	85	63	85	0.97
4	20	0.0054	0.53	12.3	5.4	1	23	91	113	91	113	0.97
5	20	2.3e-05	0.0023	19.8	1.8	2	23	133	154	132	154	0.97
6	20	4.9e-06	0.00048	21.9	0.5	1	23	160	182	160	182	0.98
7	20	6.6e-06	0.00064	21.5	0.2	2	23	186	207	186	207	0.98
8	20	9.3e-07	9.1e-05	24.2	0.8	1	23	213	235	213	235	0.98
9	20	1.2e-05	0.0012	20.6	2.4	1	23	241	264	241	264	0.98
10	20	0.00026	0.025	16.5	6.1	2	23	408	429	407	429	0.97
11	20	3.3e-06	0.00032	22.4	2.3	2	23	434	455	434	455	0.97
12	20	2.6e-06	0.00025	22.8	1.0	1	23	461	483	461	483	0.98
13	20	3.6e-05	0.0035	19.2	1.7	1	23	489	511	489	511	0.98
14	20	1.8e-06	0.00017	23.3	0.5	1	23	517	539	517	539	0.98
15	20	1e-05	0.00097	20.9	2.6	1	23	545	567	545	567	0.97
16	20	1.3e-06	0.00013	23.7	1.8	1	23	573	595	573	595	0.96
17	20	1.4e-05	0.0014	20.4	4.8	1	23	601	623	601	623	0.98
18	20	0.00032	0.031	16.2	1.3	1	23	641	663	641	663	0.98
19	20	6.2e-06	0.0006	21.6	2.3	1	23	669	691	669	691	0.98
20	20	3.7e-06	0.00036	22.3	4.1	1	23	697	719	697	719	0.98

Sequence Information

Coding Sequence: ATGATTCTGTGGCGCAGATGGGCGTGTCCCGAGTGCGGGAAGGTCTCCTGGTCGCCGGCGCACCTGCGCATCCACCTGCGCGTGCACACGGGCGAGCGGCCCGCGTGCTGCCACGTGTGCGGCGCCAGGTTTCGCACCGACGGGAACCTGGCGCGGCATCTGCGCGCGCACCGCGGGGAGAAGCCGTTCGCGTGCCGGCATTGCGCCAGGAGATTCACCCAAAAGTCAGTGCTAATCAAGCACATCCGCATCCACACTGGTGAGACCCCCTACGCCTGCAATATCTGCCACAAGCAGTTTTCCCGAAGCTTCACCCTGGCCTGCCACCGACGCGTGCACGGAGACGCCAAAGAAGCCCCATGCCTCCGGCCGGAGCCCCCGCCACCGGAGAAATGGACCTGCGAAGTGTGTGataaaacttttaaaaacaaatcCTACAGGCATGCGCATATGCTGATACATACACGGACTAAGGAATTCCAGTGTCAAGTTTGTGACAAAAAGTTTTCTAGTGAAGGGAGTTTGGTAAAGCATTTGACGGTTCACAGTCAGGCTAAGTGCAGTGTTTGTGGTAAAGAGTTGAAGACTCAAGCGAATTTAGTCAGACATATGCTGGTTCACACAGGGGAGAGACGGTTTCCTTGTAGTTATTGTGGTAAGAGGTTCACTCAAAAGTCGGTGCTGGTTAAACATGAGAGGATACACACAGGTGAAATGCCGTATCAGTGTGATGTGTGTTTTAAGAAGTTTTCTAGAAGCTTCACGCTGGAGAATCATTTGAAGCGAATTCATAGGAAAGAGAAAGTTGAGAAGCTTGATAAATCTGAAAACAGTTCTGAGAATGTGGAGAACGATATGAAGCCGTTTTGGTGTGAGAAATGTGATAATTGGTTCAACAGTCGAGAGTTTTATGCACATGAATGTGACAAAGGAGACAAGTTTAACTTGGATGATGTTTGTGAGGAAAATGAGCCAGAAATTAATTATAGTGAAAATGAAGGTAATGATAGAAATTATAGTCCATTTGTTGAAGTCAAAGTAGAAAAAATTGAACATATAGAAGTTAATAAAAGTGATGAAATCAAATTAGAAAACGAATTTAATACTCCAATAAGCAATGATGATATAAAGGAGAATTCAATAAGGAATACTGTCACGGATTTTTTAATAGACAATGATGTAAAAAccatacttaaaaacaaaaaagatagCAAGAAATGGTCGTGCAGCCATTGTAAAAAGACTTATAAAAAGAAATCGCAATACCAGACGCATTTAAAATCTCACGACACTAAAGGCTATTGCGAGAAATGTAATAAGCATTTCAACACCAACGGGAATCTCATCAGACATATGCTGATCCACTCTGGTGAGAAACCATTCCCCTGCAAAATCTGCAATAAACGCTTCACCCAGAAGAGTGTCCTGGTCAAGCACGAACGAATACACACCGGAGAAACGCCCTATAGCTGCGAAGTATGCAATAAGAAATTCGCTCGTAGCTTCACACTGCTTAACCATAAGAAAGTCCATAGCACAATCAAGCCGTATTCCTGTCAATATTGCCCGAAAGCTTTCACTCAGCGCAGCGCTCTTATGATCCATGAAAGAAATCACACAGGAGAAAAACCATTCAGCTGTAAAATCTGCAATAAACAATTTACTAGTAACAGTACTTTGACCAGTCATAGCAAGATTCATAATGGCGTCAAGGCGTTTCTGTGTGAGATTTGTAATAAACAATTTACTACTAGTAGTAATTTTTATAGCCATATGAGGATTCATAGAGGGGACAAGAGGCATACTTGTGAAGTGTGTCAAAAGAAATTCTACACTAATAGCAGTCTGACGAAGCATAAACGAGTCCACGAGAATAAGGTGTGCAAAATAGAAGATATCCAAGAAGACCTTAGCAAGCAGTTCGTCTGCGGCGTGTGTCGCCGGCGCTTCGGCAACTGCTACCTGCTGGAGCGGCATGCGCGCGTGCACTCCGGAGAAAAGCCCTTCGACTGCGAAGACTGCCACAAGAAGTTCGCGCTCAGCGGCGACTTGAACCGCCACCGCCGCACGCATACTGGGGAGAAACTTTATCGCTGCGACATCTGCCAGAAACGGTTCACCCGAAGCGGCACGCTCAAACACCATCTTAAGTTACATGACACCACAGAATAA
Protein Sequence: MILWRRWACPECGKVSWSPAHLRIHLRVHTGERPACCHVCGARFRTDGNLARHLRAHRGEKPFACRHCARRFTQKSVLIKHIRIHTGETPYACNICHKQFSRSFTLACHRRVHGDAKEAPCLRPEPPPPEKWTCEVCDKTFKNKSYRHAHMLIHTRTKEFQCQVCDKKFSSEGSLVKHLTVHSQAKCSVCGKELKTQANLVRHMLVHTGERRFPCSYCGKRFTQKSVLVKHERIHTGEMPYQCDVCFKKFSRSFTLENHLKRIHRKEKVEKLDKSENSSENVENDMKPFWCEKCDNWFNSREFYAHECDKGDKFNLDDVCEENEPEINYSENEGNDRNYSPFVEVKVEKIEHIEVNKSDEIKLENEFNTPISNDDIKENSIRNTVTDFLIDNDVKTILKNKKDSKKWSCSHCKKTYKKKSQYQTHLKSHDTKGYCEKCNKHFNTNGNLIRHMLIHSGEKPFPCKICNKRFTQKSVLVKHERIHTGETPYSCEVCNKKFARSFTLLNHKKVHSTIKPYSCQYCPKAFTQRSALMIHERNHTGEKPFSCKICNKQFTSNSTLTSHSKIHNGVKAFLCEICNKQFTTSSNFYSHMRIHRGDKRHTCEVCQKKFYTNSSLTKHKRVHENKVCKIEDIQEDLSKQFVCGVCRRRFGNCYLLERHARVHSGEKPFDCEDCHKKFALSGDLNRHRRTHTGEKLYRCDICQKRFTRSGTLKHHLKLHDTTE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -