Edem015346.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000250.1:329112-351265[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.00056 0.055 15.4 0.1 1 23 28 50 28 50 0.98 2 28 0.0036 0.35 12.9 0.7 1 23 56 78 56 78 0.93 3 28 2e-06 0.00019 23.1 2.3 1 23 84 106 84 106 0.96 4 28 1.3e-06 0.00013 23.7 5.7 1 23 112 134 112 134 0.98 5 28 0.00064 0.062 15.2 6.0 1 23 186 208 186 208 0.92 6 28 8.4e-06 0.00081 21.2 2.0 2 23 214 235 213 235 0.96 7 28 0.00011 0.011 17.7 5.3 1 23 276 298 276 298 0.97 8 28 0.00011 0.011 17.7 5.3 1 23 338 360 338 360 0.97 9 28 0.00011 0.011 17.7 5.3 1 23 400 422 400 422 0.97 10 28 0.00011 0.011 17.7 5.3 1 23 462 484 462 484 0.97 11 28 0.00011 0.011 17.7 5.3 1 23 524 546 524 546 0.97 12 28 0.00011 0.011 17.7 5.3 1 23 586 608 586 608 0.97 13 28 0.00011 0.011 17.7 5.3 1 23 648 670 648 670 0.97 14 28 0.00011 0.011 17.7 5.3 1 23 710 732 710 732 0.97 15 28 0.00011 0.011 17.7 5.3 1 23 772 794 772 794 0.97 16 28 0.00011 0.011 17.7 5.3 1 23 834 856 834 856 0.97 17 28 0.00011 0.011 17.7 5.3 1 23 896 918 896 918 0.97 18 28 0.00011 0.011 17.7 5.3 1 23 958 980 958 980 0.97 19 28 0.00011 0.011 17.7 5.3 1 23 1020 1042 1020 1042 0.97 20 28 0.00011 0.011 17.7 5.3 1 23 1082 1104 1082 1104 0.97 21 28 0.00011 0.011 17.7 5.3 1 23 1144 1166 1144 1166 0.97 22 28 0.00011 0.011 17.7 5.3 1 23 1206 1228 1206 1228 0.97 23 28 0.00011 0.011 17.7 5.3 1 23 1268 1290 1268 1290 0.97 24 28 0.00011 0.011 17.7 5.3 1 23 1330 1352 1330 1352 0.97 25 28 0.0042 0.41 12.6 1.3 1 17 1392 1408 1392 1409 0.94 26 28 0.00011 0.011 17.7 5.3 1 23 1428 1450 1428 1450 0.97 27 28 0.00011 0.011 17.7 5.3 1 23 1490 1512 1490 1512 0.97 28 28 0.00011 0.011 17.7 5.3 1 23 1552 1574 1552 1574 0.97
Sequence Information
- Coding Sequence
- ATGGAATTCACTCTGAAGCTCAGTCTCCTGGCTAAGAGCAAGCGGGCCATCATTGTCCGGAGCCCCGCCGGTGTCACGGAGTACCGCTGCGTGGAGTGCCCCCTGGGCTTCAATGATAAGAGTGACATGGAACAGCATCTCAGTGTGCATAATAAGGAGTACAGGTTTCTTTGCGGGATCTGTGGGACTGCGTTGAAACGGAAAGAGCACCTGGACAGGCACACCCTGGAGCACAAGGAGGTGAGGCCTCACGTCTGCCCGGACTGCGGCAAGGGCTTCAAGAGGAAGGAGCACCTGAACATACACCGCACCATACACAGCGGAGAGAAGAACCACACCTGCCCACTTTGTGACAAATCGTTCTACAGGAAGGACCACCTACAGAAGCACCTCCAAACCCACAACAAGTTATTCATAGAACAGAACATTTACCCTCTCAGCGACCAAGAGCTGCTAGGCATTAAGCAGGAGGTCACGGATGAAGAGCAGACAGACGACATGATGCTAGAGGTCCCTGACACGACCTTGTGCGAGCCTTTGGACCCGGAGCGGCCTCACGCGTGCCCCGTCTGCCACAAGCGGTTCAAGCGGAAAGACCACCTCAAGCTGCACAGCGTCAGCCACCTCGCGAGAGACAAGCCCTGCCCACACTGCGGGAAAGCATTTCGGACGGAAGAGCAGCTGCACAGCCACATGACTGTGCACGTGAAGCCCGCCTCGCCCGCAGCCAGCGAGGAGCTGTACATCATGGAGGAAGATTATCCGGCGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGCAGGAGGAGGACTCCCTCCTAGTCCCTCGAGTGTCCATGGAGGTCGGGGGCGCGCGGCCGCACTCGTGCAAGCTGTGCGGGCGGCGCTTCAAGCGCAAGCAGCACCTCAAGGTGCACGCCAACGTGCACGCGCGCCAGCAGCCGCCCACCATCTGGTGCTCCTTGTGCAGCGAAGGTAAGGTATTGTAG
- Protein Sequence
- MEFTLKLSLLAKSKRAIIVRSPAGVTEYRCVECPLGFNDKSDMEQHLSVHNKEYRFLCGICGTALKRKEHLDRHTLEHKEVRPHVCPDCGKGFKRKEHLNIHRTIHSGEKNHTCPLCDKSFYRKDHLQKHLQTHNKLFIEQNIYPLSDQELLGIKQEVTDEEQTDDMMLEVPDTTLCEPLDPERPHACPVCHKRFKRKDHLKLHSVSHLARDKPCPHCGKAFRTEEQLHSHMTVHVKPASPAASEELYIMEEDYPAEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVLQEEDSLLVPRVSMEVGGARPHSCKLCGRRFKRKQHLKVHANVHARQQPPTIWCSLCSEGKVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -