Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.06 82 4.8 0.0 14 41 85 109 78 111 0.84

2 7 0.0021 2.9 9.5 0.2 12 38 129 152 124 157 0.81

3 7 0.042 58 5.3 0.3 13 35 158 182 147 184 0.73

4 7 0.11 1.4e+02 4.0 1.7 13 29 186 202 179 213 0.75

5 7 0.0055 7.5 8.1 0.3 14 29 215 230 204 241 0.79

6 7 0.053 73 5.0 0.4 18 29 247 258 235 269 0.83

7 7 0.086 1.2e+02 4.3 0.3 17 29 274 286 263 297 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.06	82	4.8	0.0	14	41	85	109	78	111	0.84
2	7	0.0021	2.9	9.5	0.2	12	38	129	152	124	157	0.81
3	7	0.042	58	5.3	0.3	13	35	158	182	147	184	0.73
4	7	0.11	1.4e+02	4.0	1.7	13	29	186	202	179	213	0.75
5	7	0.0055	7.5	8.1	0.3	14	29	215	230	204	241	0.79
6	7	0.053	73	5.0	0.4	18	29	247	258	235	269	0.83
7	7	0.086	1.2e+02	4.3	0.3	17	29	274	286	263	297	0.77

Coding Sequence: ATGGAGGGTTGCGGCTCACAGGCGACACACTTTAAGCAGGAGCCTGAGTGGGAATATGACAAGGAGGACCCGCTCAGAGCGCCGTGTGACGTAGTTGTAACAGGAAACAAGTCAAATGAGCCGTCCGGTGCGGCGCGAGAAGCAACACTAAAGTACACTCGCAGCGGGGAACAGCTAGAGTCCACACCTCACAAGCCCAGCAGCATACGACCCACCGCGCCAGCTACGGACCCCGGCACAAAGGATACTGATGACGAATGCTACAACTGCGATACCTGCGGCAGAACTTTTCCACAAAAAAGCGACCTAATTCGCCACATTCAAAAAGCTATAACTGAATGTGTTCCGATAGAGAATAAAATAAGCTCTGACAGACAAGAACCCGCCCGAAACAAGGCGTTCTACTGCGGCATATGCGAAAAACAGTTCAGAGATTCCAGCGATTTAAGCAGACACAGACGTATTCACACTGGAGAAAAACCATACATATGCGAAGTCTGCAAAAAGCAGTTCGCGCAATCGAGTGTTTTAGGCAGACATAGACTTATACATACTGATCAAAAGCCACACTCGTGCAATATGTGCGAGAAGCAGTTCAGAGCATCATGCGACTTAACTAAACATAAGAGAATACATGTCGGCCAAAAAGCAGTCACCTGCGATATCTGTCAGAAACAGTTGATGGGATCAGATGCTTTGACTAAACATAGACGGATACATACTGGTGGAAAGCCGCATTCGTGTGAAACGTGTGGGAAGCAGTTTGCTCGTTCGAGTGATTTGGTAATACATACGCGGATCCATACTGGAGAAAAGCCGTATGCTTGTGATATATGTAAGAGGCAGTTTGCGCGCTCGTATAAGTTGAAGGAACATGCACGTGTCCATACAATACCAAAACCTCGGCAGCGTAAATGTCGGGATAGTGAACGTGCCCCCCGCACTCCCGTGGAACCCCTCTGA
Protein Sequence: MEGCGSQATHFKQEPEWEYDKEDPLRAPCDVVVTGNKSNEPSGAAREATLKYTRSGEQLESTPHKPSSIRPTAPATDPGTKDTDDECYNCDTCGRTFPQKSDLIRHIQKAITECVPIENKISSDRQEPARNKAFYCGICEKQFRDSSDLSRHRRIHTGEKPYICEVCKKQFAQSSVLGRHRLIHTDQKPHSCNMCEKQFRASCDLTKHKRIHVGQKAVTCDICQKQLMGSDALTKHRRIHTGGKPHSCETCGKQFARSSDLVIHTRIHTGEKPYACDICKRQFARSYKLKEHARVHTIPKPRQRKCRDSERAPRTPVEPL

Sequence clustering based on sequence similarity using MMseqs2