Edem025007.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- tc3a
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000453.1:624128-627975[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.1 1.5e+03 0.5 0.0 23 37 116 130 111 133 0.84 2 2 1.5e-07 0.00011 23.3 0.2 18 44 355 381 346 382 0.86
Sequence Information
- Coding Sequence
- ATGAAACTGGTGTCTGATGTGGTTGGCAAGCTCAAGTTCAATGGGAAGACGTGCGTTAGGTCTTTCATTCAGAAGGCTGAGGAGCTGGTGTTTTCGAGGAGCATGCCTAGGGACAAGTTGCTAACTTTTGCCTTTGAGATTTTTACTGATGATGCGCTACACTGGTACACAAGACAGAACGAGatAAAAACAGTTCGTAGATGGATACGAAGGTATCAAGCGACGGGTGATGTGAAATGCGATCGCCAAGGCCCTCGACCAATTGCTTACACTGATGACTCGGAGCGACACCGTAATATTGTGGAGGCTCACTCAGTGGCACCCTTCAAAACTACGCGTTCAAGTGCTGAAACTTTTGGAGTGTCGCTTAGCACTGTTCGAAGGCATTTACACGCAGCTGACATCCATAATTATAAACCAGCCAGAAAAATTAAGCTTACTGGCGATCACCGCACCAATAGAGTAAACATTGCCACTCGTTATTTAAATTTCGACTGGGAAAACGAAATTGTTATATTTACCGACGAAAAGTGCTTTAAGTCAGATAAGGATGGTCGAAAAGTTCTATGGAGAAGAGCTGGGCAGAGGTTTAACCCTAAAAACGTATTAGACTTGAGAACAAGCGGGTGGTTAACACTAGgtTACTGGGGCTGGATGTCTTCGATGGGCCCAGGTGAGCTAGTGGAAATAGGCGGCCGCATGAACGGTGAGCGATACCTTGGGGTGTTGAAGGACGTAATGCTGCCGTCAGTGCGTGTTGCATATCCTGAAGGCCAGATTTATCTAGTTCAGGATAATTCTGCAGTGCATCGGTCCCGAATCGTTCAAGACTGGCTGAAGACCCAAGAAGACATAACGGTGTTTAAGTGGCCGGCTAAAAGTCCGGACCTAAACCCAATCGAAAACTTGTGGGGTCAGATGGTTTTGAACTGGGACTCTAGTGaaataaagtcaaaaaaaaaattggatgaAGAGATGGTGTTTAATTACACAAGACAAACACAAATGGCTTCTTGGTCAGAGGAAACGAAGCGAGAAGCTATAAACGAAGCCAAAAAAAGTAGTATTAAAGCAGCTTCTGAAAAATATTCAATACCATACAGCACACTACAGCGGTGTGTCAAGACAGGGTCTTCTACTAAGAAACTGGGCAGGTATGTCCCTATTTTTACAAAAGCAGAAGAGCTCGAACTAGTACAGCATCTTAAGGACCTACGAGGGGtgatccaaaagtaa
- Protein Sequence
- MKLVSDVVGKLKFNGKTCVRSFIQKAEELVFSRSMPRDKLLTFAFEIFTDDALHWYTRQNEIKTVRRWIRRYQATGDVKCDRQGPRPIAYTDDSERHRNIVEAHSVAPFKTTRSSAETFGVSLSTVRRHLHAADIHNYKPARKIKLTGDHRTNRVNIATRYLNFDWENEIVIFTDEKCFKSDKDGRKVLWRRAGQRFNPKNVLDLRTSGWLTLGYWGWMSSMGPGELVEIGGRMNGERYLGVLKDVMLPSVRVAYPEGQIYLVQDNSAVHRSRIVQDWLKTQEDITVFKWPAKSPDLNPIENLWGQMVLNWDSSEIKSKKKLDEEMVFNYTRQTQMASWSEETKREAINEAKKSSIKAASEKYSIPYSTLQRCVKTGSSTKKLGRYVPIFTKAEELELVQHLKDLRGVIQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -