Edem021932.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000391.1:114698-115948[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00058 0.41 11.9 0.1 6 39 30 65 27 71 0.87 2 3 0.087 62 4.9 0.0 6 30 156 182 153 196 0.81 3 3 0.087 62 4.9 0.0 6 30 282 308 279 322 0.81
Sequence Information
- Coding Sequence
- ATGcattatttgttattgataCGTCGTCCAGAACACTGTTGTCATCGATATCACTGTAAAAGCTTAAGAAAAGTGGATACCACTCCTGCTGAAGCCGCCCAAGCAGTTGCTCTGTTGCAGGGAGGGCTTAGCATACGTGAAGTGGCTCGACAACTGAACCTATCGAAGTCATCAGTTCACCAGGTATTCAAGAGGTTCCGCGAAGAGCACAGTTTCTTTAGAAGACCAGAATCAGGCAGAACACGCTGTACTTCAGAGAGAGATGACCGTTTCCTTACGGTTTCCTCTTTAAGAAATCGTCGCTTGAATGCTGTTCAGCTACAACAGAAGCTCCAAGCGACCCGGAATGTCTCCATCAGCAGGTGGACTGTTAGAAGAAGGCCGCAGGAAAAGAATTTGACAGCTCATCGAGCTGCCAATGGACCTAAGCTCACCAAAAGTTCAAGAAAAGTGGATACCACTCCTGCTGAAGCCGCCCAAGCAGTTGCTCTGTTGCAGGGAGGGCTTAGCATACGTGAAGTGGGTCGACAACTGAACCTATCGAAGTCATTAGTTCACCAGGTATTCAAGAGGTTCCGCGAAGAGCACAGTTTCTTTAGAAGACCAGGATCAGGCAGAACACGCTGTACTTCAGAGAGAGATGACCGTTTCCTTACGGTTTCCTCTTTAAGAAATCGTCGCTTGAATGCTGTTCAGCTACAACAGAAGCTCCAAGTGACCCGGAATGTCTCCATCAGCAGGTGGACTGTTAGAAGAAGGCCGCAGGAAAAGAATTTGACAGCTCATCGAGCTGCCAATGGACCTAAGCTcaccaaaagtttaagaaaagTGGATACCACTCCTGCTGAAGCCGCCCAAGCAGTTGCTCTGTTGCAGGGAGGGCTTAGCATACGTGAAGTGGGTCGACAACTGAACCTATCGAAGTCATTAGTTCACCAGGTATTCAAGAGGTTCCGCGAAGAGCACAGTTTCTTTAGAAGACCAGGATCAGGCAGAACACGCTGTACTTCAGAGAGAGATGACCGTTTCCTTACGGTTTCCTCTTTAAGAAATCGTCGCTTGAATGCTGTTCAGCTACAACAGAAGCTCCAAGCGACCCGGAATGTCTCCATCAGCAGGTGGACTGTTAGAAGAAGGCCACAGGAAAAGAATTTGACAGCTCATCGAGCTGCCAATGGACCTAAGCTCACCAGGGACCACCGCACTGCAAGACGTAACTTTTCTCGAGAACACCTGAATTGGACCCTTTAA
- Protein Sequence
- MHYLLLIRRPEHCCHRYHCKSLRKVDTTPAEAAQAVALLQGGLSIREVARQLNLSKSSVHQVFKRFREEHSFFRRPESGRTRCTSERDDRFLTVSSLRNRRLNAVQLQQKLQATRNVSISRWTVRRRPQEKNLTAHRAANGPKLTKSSRKVDTTPAEAAQAVALLQGGLSIREVGRQLNLSKSLVHQVFKRFREEHSFFRRPGSGRTRCTSERDDRFLTVSSLRNRRLNAVQLQQKLQVTRNVSISRWTVRRRPQEKNLTAHRAANGPKLTKSLRKVDTTPAEAAQAVALLQGGLSIREVGRQLNLSKSLVHQVFKRFREEHSFFRRPGSGRTRCTSERDDRFLTVSSLRNRRLNAVQLQQKLQATRNVSISRWTVRRRPQEKNLTAHRAANGPKLTRDHRTARRNFSREHLNWTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -