Edem004889.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- clz9
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000072.1:83070-85415[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2e-09 1.4e-06 29.4 0.0 1 38 25 61 25 67 0.90 2 2 0.64 4.5e+02 2.1 0.0 23 40 757 774 757 777 0.88
Sequence Information
- Coding Sequence
- ATGGTGCGAAAGTATAAACGTACGTACCGTAATTGTCGGAAGGGAAAAACATTTCAACCCTACACGTCATATACCCAAGATGCATTGGCTAATGCTATGGCCGATGTGGCAGCTGGCATGTCTTTGGCAGAAGCTGGCGAGAAACATAATATACCCAAGAGTACGCTATCGCGGAAATGTAGGGGGTTGAACAATACGCAAGATAAAGCAGGACACCCAACTCTATTCACGCCTGCTGAGGAGAAAGATTTCATTCAGTACATGACGGTACTAGGTGATTGGGGCTTTCCGTTTGATACTTTGGATTTAAGAATTTTTGCccaaaaatatctaaataaaCTTGGCAAAACTGTATATTCATTAAAAGACAATATGCCGGGATATGAGTGGGCCAAAAACTTTCTACATCGACACAAAAATGAAATATCCAACCGCTTCGCAGCAAATATTTCTACAGACCGAGCGAAATTAACTCCTCAATTGCTGGATTCTTTTTTTGAAAACTATGCACAAACAATCGACGGCGTGAGCCCAGACTGCATCATCAATTACGATGAAACCAATTTGACAGACGATCCgggaaacaaaaaatacatttataaaaGAGGATCCAAGTACCCTGAACGAGTTATTAACAATTCGAAAACTGCAGTAAGCATCATGTTTTCCAGGACGGCAGATGGCACACTTTTACCTGTTTACGTCGTCTATAAAGCAGAGCACTTATGGGATTCATGGCTAGAAGGAGGGCCTGACAGTTGCCGGTATAATCGTTCAAAAAGCGGGTGGTTTGATTTGACATGCTTTGAAGACTATTTCCATAAAGTTGTAGTACCTTATGCAAAGAAAAAAACAGGCAGAAAAGTCATAATTGGAGACAACTTATCATCGCATTTCTCTGATTCAGTGTTAAAAACTTGCGAAAAATATGACATCTCGTTTGTGTGCTTACCTCCAAAGTCAACGCACATTTTGCAGCCGTTGGATGTAGCGTTCTATGCCCCTTTAAAACATTATTGGAGGCAAATACTAACAGATTGGAAGAAACAAGAGGGGCGTAAGCATAAAACTCTAATCAAAACTGAATTCCCGCGGCTTTTAAAGAAACTCATGGACAAGTTGGCAGAAAATGGTGTAGGAAGCACAAATTTAAAAGCTGGGTTTGAAAAATGTGGTCTCTACCCCGTGAATTCTCTGCGTCCTAAGTCAAGGCTTCCCCAGACAATTGCCAGTGAATCAGATATCAATTGTACAGCGTCTGAAGTTGTAGTTAGTATGTTACAAGAGATCCGAGGAGTTACAGATCATACTGGAAATACAAGACGAAAGAAGTGCGATGTGGAACCGGGGAAGAGCATAACAGCTAAAGACATGCGAAAAGAGCAGGTGGTCAAGAAGgggcaaataaataataaggatCGTTTGACTTTAGAATCTACGTCGGACCTCAGTGATTCTGATGTGACTATTGTCTTGAGTGAAATTGAAGAACCAGGACCATCCACATccaaagaaaaaaaacgtaagacgaaaacaaaaatgcaaaaattaatGAGTGATGGTAGACCTAAAACCAAAATACAAAAGACTCACAAATATCCACAAAACAGGAAACGTAAGACCATCTCGCAAATAGAAGCAGAAATAGATCAAGAAATATTGCAAGAATATTGGGAAGAATCTAATGTTAATCagcaaaaaagaaagaaagctgGTTATTATTCTCAGAGAAAAGATTCCACAACAAGCGTGTCAGACATTATGAGCTTACATAGTGATTCGGATGTTTTGGACGCTTTAAGTGACATAACCAATGAGATAATTTCGAATAATACTCCCATAGAAAAAGGTCGAGGTAAAAAGACCACACATAAACTTACCACTAATACCAAGAACCAAGATTTAGACATTTTATCAGAACCGAAAATAGCTATAGTCGGTCCTAAAAAAGCAAAAGCTGAGTGCGAGCAAATGGTTAGCATTGATGGAACTTCCGTACAAGATATTGTTTTTCCGATGACTGATGCTGAACCCATGCAAATAGTGACAACTCCTGAAACTTCCGTGCAAACTATTATTCATGAGGATGGCTGCACTTCTACCTTAATAACTGCGTTAGTGAACAATTGTGACCTCACTGCCCAAAGTGCTGCAATGCCTACAATGGATGAAGATATTGGTTTAAAGTCCACGACTTTAAAGAAGGCAGATCCAGTTCCGAATGAGTGCTTAGCACAAAGCGATTCTTCTGTACAAGATGATTCTGTATGTGATCAGTATTCCGTGAATGATAAAGTTCTCGTTCGATACtatcaaaggaaaaaaatggATATATTACATTGGTAA
- Protein Sequence
- MVRKYKRTYRNCRKGKTFQPYTSYTQDALANAMADVAAGMSLAEAGEKHNIPKSTLSRKCRGLNNTQDKAGHPTLFTPAEEKDFIQYMTVLGDWGFPFDTLDLRIFAQKYLNKLGKTVYSLKDNMPGYEWAKNFLHRHKNEISNRFAANISTDRAKLTPQLLDSFFENYAQTIDGVSPDCIINYDETNLTDDPGNKKYIYKRGSKYPERVINNSKTAVSIMFSRTADGTLLPVYVVYKAEHLWDSWLEGGPDSCRYNRSKSGWFDLTCFEDYFHKVVVPYAKKKTGRKVIIGDNLSSHFSDSVLKTCEKYDISFVCLPPKSTHILQPLDVAFYAPLKHYWRQILTDWKKQEGRKHKTLIKTEFPRLLKKLMDKLAENGVGSTNLKAGFEKCGLYPVNSLRPKSRLPQTIASESDINCTASEVVVSMLQEIRGVTDHTGNTRRKKCDVEPGKSITAKDMRKEQVVKKGQINNKDRLTLESTSDLSDSDVTIVLSEIEEPGPSTSKEKKRKTKTKMQKLMSDGRPKTKIQKTHKYPQNRKRKTISQIEAEIDQEILQEYWEESNVNQQKRKKAGYYSQRKDSTTSVSDIMSLHSDSDVLDALSDITNEIISNNTPIEKGRGKKTTHKLTTNTKNQDLDILSEPKIAIVGPKKAKAECEQMVSIDGTSVQDIVFPMTDAEPMQIVTTPETSVQTIIHEDGCTSTLITALVNNCDLTAQSAAMPTMDEDIGLKSTTLKKADPVPNECLAQSDSSVQDDSVCDQYSVNDKVLVRYYQRKKMDILHW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -