Edem014979.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000244.1:214008-216150[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.2e-11 1.6e-08 35.6 0.0 2 39 17 55 16 59 0.89
Sequence Information
- Coding Sequence
- ATGGTGCggaattataagaaaaaaaacacaagatGTACAACAGTAAATGAAAATGATATGGTACAGGCAATAAAAGATGTTTTAGAAGGAAAATTGTCGTATAGAAAGGCAGCGGATAAACACAATGTTAAAGCTTCAACTTTGGAAAGTCgagtaaagaaaataaagaacAAAAGTGATGAGGTTGGCCCGAACCATACATATCAGTCTAAATTCACAAGTTACCAAGTTTTTTCTAACGATGAAGAGTCAGAGTTGATTGAATACATTGAAGAAAGTTCGAAAATGCATTTCGGGCTCACACTACTCCAAGTCAGAGCACTGGCATATCAGTATGCCAAAGCATTGAAACGAAAATATCCACCTAAATGGGATGAAACTGGATTGGCAGGTATTGACTGGATCCATGGATTTCGAAAGAGAAATAATCGTTTAAGTTTAAGAAAACCGGAAAACACAAGTGCTGCCAGAGCTTTTGGTTTCAACAAAACAGTTGTAAATGAGTTTTTCGATAATTTGAAAACTGTATATGAAAGACACAGGTTTACTGCAGATCGTATATTTAATTTCGATGAGTCTGGTATATCGACTGTTTTAGATACTCCGAAAGTGTTAGCTGCAAAGACACAAAGGCAAGTCGGACAAATAGTCTCCGCAGAAAGAGGTGAGCTGGTTACATTTGGCGGCATTATCTCAGCGAGTGGAAACACCATTCCTCCGCTGTTTGTGTTTCCTCGAGTACATTATAAAGACCACTTTATGGAAGGAGCTCCAGAAGGTAGTCTTGGGACTACAAATAGAACTGGTTGGATCAATTCTGAAATATTTGTAGAAGTATTGAAGCATATACAGAAACATACACTGAGTACAAAAGAAAATCCAATTCTATTATTGTGTGATAATCATGAAAGTCACATAAGTTTGGCAGCGATTAACTACGCACGAGACAATGGTATAATCTATCTGTCATTCCCACCACACACATCTCACAAGCTGCAACCCTTAGACGTTGCAGTGTTTGGGCCATTTAAGTCCAAATTAAAAACAGCTTTCAATGATTGGCACGTGACAAATCCAGGTAAAACGGTTACCATTTACAATATCCAAAAAATTGCCAAGCTAGCATACTTTGAGGCGTTCACTGCTAAGAATATCACGAGTGCATTTAGTTCGCCAGGGATATGGCCTTTCAACCAGTTGGCATTCAGCGACGAAGATTTTGCACCAATTAAGGTGTATACGTCTGGTAATAGCTCGATTACTGACCAACAGGTGCAAGAACCGCAGGCCTCTAGTAACGAGTTACAACAAAATGTTCACACAGAAGCAGCTACTACACCTCAGATCCCCCCGCAAgtaacctctgaaacacctgaACTTCAAGTAAGATCTACACCAGAAATTGAGCTCACTCAGAAAACTCCTCCTCGAGCACATGAAGTTCAATCTGTGGCTTCTGGGTCACAGGAAAATCCAAGTCCAATTACACCAGCAATAATTCGGCCTTATCCTACGgctgaaaaaaagaaaaaagcggtTAAGGGAAGACAACCAGGAAAATCTAGAATTTACACCGATACACCTGAAAAAAATAGACTGGAAGACCTGCATAATGCAAAGcaattaaagaaaaaagaacAAGAAAGAAAAGCTCAAGCGAGAGAAATAAAACGCACTCTAAAACTTACCGCACAATCAAAGCCTAAAAAAgcgaaaaagaaaaaagaagaaaGCAGTGATTCAGAGTCTGAAAAATCGGAACAAAAAGTCATCAACCATTATTCTGAAAGGGAGTTAAAGGTCTCGTACTTGAGAAAAAAACCAGGATTGTCTTGGTCGTTTGTGTTTCCAAATATTGCAGACGAACACAGCGTGGACATTTCTGATGTCGCATTAATTCTTCCTGACCCGAAATCTCCAGGAGCCTCTACGGCCAGAACCTCGAGATTATACACATTTCCTATTGATATGACTCGATTTAATGTCCAGTAA
- Protein Sequence
- MVRNYKKKNTRCTTVNENDMVQAIKDVLEGKLSYRKAADKHNVKASTLESRVKKIKNKSDEVGPNHTYQSKFTSYQVFSNDEESELIEYIEESSKMHFGLTLLQVRALAYQYAKALKRKYPPKWDETGLAGIDWIHGFRKRNNRLSLRKPENTSAARAFGFNKTVVNEFFDNLKTVYERHRFTADRIFNFDESGISTVLDTPKVLAAKTQRQVGQIVSAERGELVTFGGIISASGNTIPPLFVFPRVHYKDHFMEGAPEGSLGTTNRTGWINSEIFVEVLKHIQKHTLSTKENPILLLCDNHESHISLAAINYARDNGIIYLSFPPHTSHKLQPLDVAVFGPFKSKLKTAFNDWHVTNPGKTVTIYNIQKIAKLAYFEAFTAKNITSAFSSPGIWPFNQLAFSDEDFAPIKVYTSGNSSITDQQVQEPQASSNELQQNVHTEAATTPQIPPQVTSETPELQVRSTPEIELTQKTPPRAHEVQSVASGSQENPSPITPAIIRPYPTAEKKKKAVKGRQPGKSRIYTDTPEKNRLEDLHNAKQLKKKEQERKAQAREIKRTLKLTAQSKPKKAKKKKEESSDSESEKSEQKVINHYSERELKVSYLRKKPGLSWSFVFPNIADEHSVDISDVALILPDPKSPGASTARTSRLYTFPIDMTRFNVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657092;
- 90% Identity
- iTF_00657092; iTF_00657101; iTF_00657093; iTF_00657094; iTF_00657095; iTF_00657096; iTF_00657097; iTF_00657098; iTF_00657099; iTF_00657102; iTF_01133651; iTF_01133652; iTF_01133653; iTF_01133654; iTF_00409211; iTF_00409212; iTF_00656023; iTF_00656025; iTF_00656026; iTF_00656027; iTF_00656028; iTF_00656029;
- 80% Identity
- -