Edem010012.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000160.1:629024-632983[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.3e-07 0.00045 21.4 0.1 14 39 2 26 1 31 0.88 2 2 7.8e-09 5.5e-06 27.5 0.0 1 41 106 147 106 151 0.89
Sequence Information
- Coding Sequence
- ATGAAAGGCACAACTATCCACGCGGCGTCTAAGGCTTACGGAGTACCCCGACCCACACTTTACAGCCGACTTAAATTAAACCAATTTGGCAAGATGAAAATGGGACCAGATCCATTCTTAGGAGAAGATGGAGAAGATCGATTAAAATCTTGGATTATGCATACAAGTAAATCTGTCCCGATCAAGAAAACGGACGTCATAGATGCGGCTCAAACAATTGCAAAAGACATGGGAAAAAGGAATTTCAAAAATGGGAAACCTGATGACCCTctgaagaagaaaaaaaaaacggggAAAAAACATACATGTTCTTATACACCAGAAGCTTTGAAACGTGCTCTTCAAGATATAAGAATTAAAGGCAAAGGGGTGAGAGAAACCTCCAGGGCTTATGGTATTCCTCGAGCTACAATCCATTCTCGTCTTCTACAAAACCAATACGAAGAGTTGAAAAGGGGACCTAATCCTGTATTAGGACACGAGGGAGAATGCCGCTTAAGAGATTTAATTATACAGGAAAGGAATAACGGTCTCGTCAAGAAAAAGTTTGTTATAGATAAtgctataaaaatattaatagaccTTCGaaagaaaaacatatttaaaaaagggCGACCTGGAGGCACATGGTATAAGAAATTCTTTGATCGACACCCTGACTTGAAGCAGTTTATAGAATCAACGAAGAGAGTGGAGAAGCCCGTTGCGTTCCGAAACGGCGACTTATACCCGAAGTTAATATTCCAAGGTCATCAGTTCAGACCCCACAATGCGTACCGCCGCCGTCGTCTGCAGCTGTGGTACTGCCGGCACAGGAAGAGTTCCAATTGCAAAGCCATTGTGAGGACTCTGGACGGTGCGATTGTGGACCCGGTTTCTGAGATCGAGCATTCACATTCCTTCTTTCAGCATTCGTAA
- Protein Sequence
- MKGTTIHAASKAYGVPRPTLYSRLKLNQFGKMKMGPDPFLGEDGEDRLKSWIMHTSKSVPIKKTDVIDAAQTIAKDMGKRNFKNGKPDDPLKKKKKTGKKHTCSYTPEALKRALQDIRIKGKGVRETSRAYGIPRATIHSRLLQNQYEELKRGPNPVLGHEGECRLRDLIIQERNNGLVKKKFVIDNAIKILIDLRKKNIFKKGRPGGTWYKKFFDRHPDLKQFIESTKRVEKPVAFRNGDLYPKLIFQGHQFRPHNAYRRRRLQLWYCRHRKSSNCKAIVRTLDGAIVDPVSEIEHSHSFFQHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -