Edem006615.1
Basic Information
- Insect
- Epinotia demarniana
- Gene Symbol
- -
- Assembly
- GCA_945869435.1
- Location
- CAMBUM010000104.1:1442178-1442888[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 6.6e-08 4.7e-05 24.5 0.0 13 40 26 54 16 58 0.85 2 3 6.6e-08 4.7e-05 24.5 0.0 13 40 85 113 75 117 0.85 3 3 6.6e-08 4.7e-05 24.5 0.0 13 40 144 172 134 176 0.85
Sequence Information
- Coding Sequence
- ATGCCTCGAAACCGACCGAGAACTACCACTAAAGCAGCATGGAGCGAGCAAGACTTAATCAACGCAAAATCCGCAATTGAGGGAGGCATGTCCAAAAGAAGAGCAGCGATTACATTTAAGATCCCATTTTCTACACTGAGAGAGAGACTGATGAAAGAAAACCTAGATAGTCCCCAACTTGGTCGTAAGCCAGTGTTCACTAAAAACAAAGCAGCATGGAGCGAGCAAGACTTAATCAACGCAAAATCCGCAATTGAGGGAGGCATGTCCAAAAGAAGAGCAGCGATTACATTTAAGATCCCATTTTCTACACTGAGAGAGAGACTGATGAAAGAAAACCTAGATAGTCCCCAACTTGGTCGTAAGCCAGTGTTCACTAAAAACAAAGCAGCATGGAGCGAGCAAGACTTAATCAACGCAAAATCCGCAATTGAGGGAGGCATGTCCAAAAGAAGAGCAGCGATTACATTTAAGATCCCATTTTCTACACTGAGAGAGAGACTGATGAAAGAAAACCTAGATAGTCCCCAACTTGGTCGTAAGCCAGTGTTCACTAAAAATCAAGAATACGAAATAGCTGAACAGGTAAAGCTGTTAGGTTCATTGTATTATGGGTTAACAGTTGTAGATTTGCGAAAGTTGGTTTTCAAGTATGCAGAGATGCAAAACGTAAAAAATAATTTCGATAAAAATAGCCAGACGGCCGATTAG
- Protein Sequence
- MPRNRPRTTTKAAWSEQDLINAKSAIEGGMSKRRAAITFKIPFSTLRERLMKENLDSPQLGRKPVFTKNKAAWSEQDLINAKSAIEGGMSKRRAAITFKIPFSTLRERLMKENLDSPQLGRKPVFTKNKAAWSEQDLINAKSAIEGGMSKRRAAITFKIPFSTLRERLMKENLDSPQLGRKPVFTKNQEYEIAEQVKLLGSLYYGLTVVDLRKLVFKYAEMQNVKNNFDKNSQTAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -