Ebru046904.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977951.1:5935396-5943305[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.051 6.5 9.4 0.1 1 23 28 51 28 51 0.96 2 15 0.051 6.5 9.4 0.1 1 23 90 113 90 113 0.96 3 15 0.051 6.5 9.4 0.1 1 23 152 175 152 175 0.96 4 15 0.051 6.5 9.4 0.1 1 23 214 237 214 237 0.96 5 15 0.051 6.5 9.4 0.1 1 23 276 299 276 299 0.96 6 15 0.051 6.5 9.4 0.1 1 23 338 361 338 361 0.96 7 15 0.051 6.5 9.4 0.1 1 23 400 423 400 423 0.96 8 15 0.051 6.5 9.4 0.1 1 23 462 485 462 485 0.96 9 15 0.051 6.5 9.4 0.1 1 23 524 547 524 547 0.96 10 15 0.051 6.5 9.4 0.1 1 23 586 609 586 609 0.96 11 15 0.051 6.5 9.4 0.1 1 23 648 671 648 671 0.96 12 15 0.051 6.5 9.4 0.1 1 23 710 733 710 733 0.96 13 15 0.051 6.5 9.4 0.1 1 23 772 795 772 795 0.96 14 15 0.0004 0.051 16.0 5.1 1 23 803 825 803 825 0.96 15 15 0.094 12 8.6 0.7 1 23 853 880 853 880 0.94
Sequence Information
- Coding Sequence
- ATGCTTGTACGCAGTGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAATGCGGTCATAAGTGAGTACTTTACTGAATACTTGCTGAGCCAGCACACCAGCCAGCACATCTCGGCGTACGCGTGCACGCTGTGCGACATGTCCGCGCCCACGCTGGCCACGCTCGCGCAGCATGTGCGGTACAGGCATCTGCCCACACAGTGCAGGATGCATGCTTGTACGCAGTGCGGTCATAAATCAACAACAAAGTACGACCTCCGCAAACACATGGAAACGCACACACGCAAAAAGAAACGCAAAGACAACGATAGCGACATTTCCGTGTCAGATGAAGAACCGAGGAAGAAATCTTCGAGGAAGTACGCGTGCCATATTTGTCCGGAGACGCAGACTAAAGTGTTCACCAGAGGGAGCAGATTGACGACGCATTTGGTGAAGGTTCACGGGGCTCAGTGGCCTTTCGGGCACAGCAGGTTTAGGTACCAAATAAGCGAAGACGGCATGTACCGCCTCACGACAACGCGAATCGAGGTTCTAGAAGTTTCCGAAAAAATCGTCGACGGGTACAGTCGACCCCAGGATTCTCTCTCAAACACTTTCGAGTACAATCTGAAACAAAAAGCGGATGCCACACCAACTACACCAACTTGCTTCGAGATCTCACTAAAGGGCAATGAGGTCTTGAAAAATGAACCTAAAGACGATAAGAGTGCAGTCGAAATTACAATGTGCGATGTCGATGAGGAGGGCAAAATTATTTGCTCGGAGGTTATTAAGTCTGATATGTTTTATAGGAGGCTAaaatga
- Protein Sequence
- MLVRSAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHNAVISEYFTEYLLSQHTSQHISAYACTLCDMSAPTLATLAQHVRYRHLPTQCRMHACTQCGHKSTTKYDLRKHMETHTRKKKRKDNDSDISVSDEEPRKKSSRKYACHICPETQTKVFTRGSRLTTHLVKVHGAQWPFGHSRFRYQISEDGMYRLTTTRIEVLEVSEKIVDGYSRPQDSLSNTFEYNLKQKADATPTTPTCFEISLKGNEVLKNEPKDDKSAVEITMCDVDEEGKIICSEVIKSDMFYRRLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -