Basic Information

Insect: Epinotia brunnichana
Gene Symbol: lola_4
Assembly: GCA_963854355.1
Location: OY977947.1:21519357-21520913[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.0003 0.038 16.4 1.4 1 20 107 126 107 128 0.96

2 4 0.039 5 9.8 5.8 1 23 136 159 136 159 0.98

3 4 0.00076 0.097 15.1 1.6 1 21 311 331 311 332 0.94

4 4 0.00042 0.053 16.0 3.1 1 23 341 363 341 364 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.0003	0.038	16.4	1.4	1	20	107	126	107	128	0.96
2	4	0.039	5	9.8	5.8	1	23	136	159	136	159	0.98
3	4	0.00076	0.097	15.1	1.6	1	21	311	331	311	332	0.94
4	4	0.00042	0.053	16.0	3.1	1	23	341	363	341	364	0.96

Sequence Information

Coding Sequence: ATGCCGAACAGGGTCGTAACGCGAAGTAAAAAAGTAGTCGAAGAACCGCCTACCGCAACCACTTTCGCAGTATTGAAGAACGTGACTTCGCCCAATTCGCTAGTAATGCCGGAAGAAACCAAGGAGAATAAGAAACAGCCAGCAAAACCGGGTCCAAAACCGGCGACTCCTAAAGCTTTAATTCCTAAACCAGAACCTGAGCCCAAACCGGAAGCGAAGAAGAAAGCGGAGCAGAAGGAGTCTCGCTACAACATATTCCCTCGCTCAGATCGGCCGGCAAACCTCCCTTGCGCTCAATACAAAACCGAGAACAATAAGTACAAGTGTCCCAACTGCCAGCGCTGCTACAACGCGCGCAAGAATCTCGTGCGACATATCACACTCGAGTGCCGCCGCGAGCCCCAGTACAAGTGTCCTTATTGCACGTACAGCAAGCATCGCCGCAACGAGCTAAAGAAACACCTGCAGCGGAAGCATCCAGACCATCGTTCCCCGCGGTCCCCGTCGCCGTCGCCCGAGCAGACCCCTGTGTCGACCCCTATTCGCCACAAGGAGCTGCCGTCGGCGCTGCTGTCGCTGCTGTCGGCGCAGGCGCAGCCGGGGCTGGCCGGGCTGGTGCCGGCCTGCATCCAGGTCACCAACATCCTCAAGCCCCCACTCCTGCCCAAGCATCCGCTGGACTCGCTCGCCGCTATCCCCGACGATTTGAAAGCCCATCTGCTCCAGCAGGCCTTTCTGCAGAATAATAACGCGCCCAAACGCGAGGAGCTAGATTCCGATGAGTACGACGACACTGACGACATCGTACTGCCAGAGGACACAGACGCTTTCTATGACCACTCTGTGCCCGGTGATGATCAAGGAGATAACAAAATGGAGGTGAAATTTTCGCGCCGCGATGGGAATAGCTCGGACGACGCGAGCCGCCATTTTGAGTGTCGACATTGTGGTAAGAAGTATCGGTGGAAGTCGACGCTGCGCCGCCACGAGAACGTGGAATGTGGCGGCAAGGCGCCGGCCCACCAATGCCCGTATTGCTCCTACAAGGCCAAGCAGAGAGGCAACCTGGGTGTTCACATCCGCAAACACCACAACACCGAGTGGTACATGTACGCTAGCAACAAAGTCAGGCGTAACAAAAAAACGTCTATCTAA
Protein Sequence: MPNRVVTRSKKVVEEPPTATTFAVLKNVTSPNSLVMPEETKENKKQPAKPGPKPATPKALIPKPEPEPKPEAKKKAEQKESRYNIFPRSDRPANLPCAQYKTENNKYKCPNCQRCYNARKNLVRHITLECRREPQYKCPYCTYSKHRRNELKKHLQRKHPDHRSPRSPSPSPEQTPVSTPIRHKELPSALLSLLSAQAQPGLAGLVPACIQVTNILKPPLLPKHPLDSLAAIPDDLKAHLLQQAFLQNNNAPKREELDSDEYDDTDDIVLPEDTDAFYDHSVPGDDQGDNKMEVKFSRRDGNSSDDASRHFECRHCGKKYRWKSTLRRHENVECGGKAPAHQCPYCSYKAKQRGNLGVHIRKHHNTEWYMYASNKVRRNKKTSI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01073184;
90% Identity: iTF_00654897;
80% Identity: -