Ebru003389.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977935.1:4144143-4154445[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.2 1.5e+02 5.1 1.6 2 23 1456 1478 1455 1478 0.94 2 9 9.7e-05 0.012 17.9 2.0 1 23 1484 1506 1484 1506 0.96 3 9 2.6 3.3e+02 4.0 1.9 5 23 1515 1533 1514 1533 0.96 4 9 0.00034 0.043 16.2 1.8 1 23 1539 1561 1539 1561 0.97 5 9 0.0046 0.58 12.7 0.9 1 23 1567 1590 1567 1590 0.94 6 9 0.0029 0.37 13.3 2.1 1 23 1657 1679 1657 1679 0.98 7 9 0.077 9.9 8.8 3.8 3 19 1687 1703 1685 1707 0.89 8 9 0.00013 0.017 17.5 0.1 1 23 1711 1733 1711 1733 0.98 9 9 0.0052 0.66 12.5 0.5 1 23 1739 1762 1739 1762 0.94
Sequence Information
- Coding Sequence
- ATGGATAATTTAACGACGAAACTGCTCATCGGTAATCTCGACGGAAAGAGCAATTGGTCGACGTGGaagtataaaatatgtatagccCTGAGAAGCATTCCACATGCTTTAGATATAGTAGAGGGTAGAATGACGAAACCGGTCAATGGAGAAGCGGCAGGAGCAGGAGACCAGCTTGCATCCTTTACAAAGGCAGACTGCAGTGCATTACTCCTATTGACAAGCAATATGACTGATGAGACGTTACAAAAGGTAATGCGGTACAACACTGCTCGAGAAGTATGGTTGGAACTCCACAGATTGTTTGACGGAACCAGTGAAGATAAAAGCTACAACCTATGCATGAGCTTCTTTGGATTTAAACGTAATCCTGAAGATGATATCGCAACGCATATGTGTAAATTAAAGAATATATGGACTGATCTTAATCTAGATttgcaaaaagaaaaaaaggagtTACCCGAACTCCTATTGATTTGCAAGATACTGGACACATTAAGTGAAGAATATACGTCCTTTAAGAGTAGCTGGCTCTTGGTACCCAAAGCAGACAGAACAATAGAGAGTTTGACCAACCACTTGTGTGCATATGAGAGATCAATAAAAGGTAACTCAGTACCTAATGAAGAAGCGCTTATCACAAGTTCAAACGCTGTAAAAGAGAAGAAGAACAAAGATAAGAAGATTAGATGCAATTACTGTTCAAGGATTGGTCATCGCGTTAGGAATTGTCAAAAATGGATTCAAGATGGCAAACCGCCTAAGAACAGCAGTGCATTGAAAGGCGATAGTACGCCATCGACCTCTCATGCAGTAAATATGACAGTGATGTTTGTACAGAATGAAGTCTTGGCTGTTGAGCACGACAAGGACAATTGGTACGTAGATAATGGTGCCACAAGTCACATCACTAACAGGGGTGACTTATTCACGACCTTCCAACAATTCCATGACTCACATACGGTCACAACGGCCAATGGCAACATTTTGCAAGCCGAAGGAAAAGGATCGATTGTATTGGAAGCTAATATTAAAGGGAAAGTCTCTCAAGTTACTTTAGAAGATGTTTGGTATGTTCCAGGTATACAGAAAAACCTGTTCTCGGTCCTAGCGGCTCACGACAAGAACTCGGACAGTAAGTTCGAATCAACAACTGAAAATTGCAGCATATTGATTAACGGAACTGTCAAGGTCGTTGGCAAGCGACAAAAATTCGGTGGTCTCTATAAATTAGAAGTGAAAAATGTTATACCAAAGAAGATGGTCACTTACCTAACAACAGAGACACAGCTCTATCATGAGAGATTTGCCCACCAGAATAAACGGCATATAAGAGCATTTGTGAAGAGAGAGTTGGGCATAGAGCTTCCCATAGATGAGTCTACGTGTGAAAGCTGCCTATTCGGAAAATCACACCGACATAAGTTCAGCACCAGAACTAGAGCATCACAACCCGGTGAGCTCATTCATAGCGATGTCTGCGGACCATTTCCGAACTCAATCACAAATCTACGGTATTTCGTTTTGTTTCGAGATGATTACTCGGGCTATCGTCTCATATACTTCATGAAAGCAAAGTCAGAAGTAAAAGAGAAGCTGAAAGACATGATTTCAGAAGTACGAACTACAGGTCATACAATTAAAACTCTCCTGAGCGACAATGGAGGCGAATATGACAATAAGGACGTCAGAGATATCCTTGCTAAGAATGGGATAAGGCAGAGACTAACAATGCCATACACACCAGAGCAAAATGGTTGCTGCGAAAGAGATAATCGCACGTTAGTCGAAGCAGCAAGGACTATCATGTACAGTGGAGACGGTTTCCCTCGAGCGCTTTGGGCAGAAATAATAAACACGGTGGCATACATTATCAATAGAACGGGTCCGTCTAGAGTAGATAGTAAGTCGCCGTACGAGTTATGGAATGGGAAGAAGCCCAAGATAACTCATTTGAAGATAATTGGAAGCACGTGCTATTCCCACATTCCCAAGCAAAAGAGACAGAAACTCTCTAAGAAAGCTTACAAAGGAAGACTCGTTGGTTATGATAATGACGACGGTTATCGCATATGGGCAGCAGTAGAGAACAACAAATATAGACTCGTTAGATCTCGTGATGTCATATTTGATGAAAAACCACTCTACAGAGCAAATGCTGAGATCGAAAtaccagaaatatctcggcatACCCCAACTCCAAATGCACTGGAGATAAGATTAGAACCACCGGTTAGTAGCCGTCCAACATTAATATTTGGTGAACCGATACGAAACGAAAACGAGCATTCAAGTCTCCAAGAAGAAGACAACACATTATCGTTCGATTTTGAGGGGGAAAGTATAGTCGAAGATTTGATCAACTCGGCACAAGAGCCTTCTCTTAGTGACGAGAGGTCAGAGCAATTGGTGATAGCTGACGAAGGAGCGCCAGCTGAACCTGAAGAATTCTTTGACATCGTGCCACACAATCACAACTTAAGGCAAAGATCGACACTTCGAGCACCGGCTAAACTCGACGACTATGTGTGTAATATTAACAGCTCCGCAAACCCCGAGAATTACAGAGAGGCAATTGAGAGCCCTCAGAAAGAAAAGTGGAAGGAAGCAATGGAAAAAGAGCTGGCATCACTCAAAGACAATGACGTGTGGATGCTGAGTGCCCTACCACCTAAGAGAAAGGCGCTTTCCTCAAAGTGGGTTTTCCGGATTAAACGAAATCCCGATGGCTCTATAGATAAATACAAAGCACGCCTGGTGGTAAAAGGGTTCAAGCAAAGAAAAGGTGTTGACTATGACCAAACGTTCAGTCCGGTTGCCAGAATGGGCACAATAAGAGCGCTTATTAGTGTTGCAGCTAAGGAAAGATTGGTCTTAACACAGTTTGACGTCTCAACGGCATTCTTGTACGGAAAACTACAAGAAGAGATCTACATGCAACAACCAGATGGCTTTGATGACGGTTCAAACAGAGTTTGGAAACTGAAACGTAGTTTATACGGACTTAAGCAAGCCCCACGTTGCTGGAACTCTTGCTTCGCTGAGATCCTTTTGGATCTAGACTTCAAACAATGTGACGCCGACAGTTGTTTGTTTGTCAAAAACGTTAATGGAAAGAAATTGCTCATAACGTTGTACGTGGATGATGGGCTGGTAGCTGCTACGGATGCAGAAGTAACAGACGCATTTCTAGCAGACTTGAGGAAAAAGCTGAAAATAACTACGAAGCCTGCATCTTATTACCTAGGTTTAGAAATTGAGCAAGATAGCGATGGATCTATAACCATTAAACAGGAAAGTTATACAAAGAAAATTCTGGAGCGATTCCATATGGCGGACTGCAATCCACTTTCAACTCCTATTCAGAAGGAATCAGTGACATCGAACACTGAGTCAGAGAAAGTGGTAGAACAAAGGAAAGATTTTCCATATCGTGAAGCAGTTGGTGCTTTGTCATACCTTATGGTCGGAACTCGTCCGGACATAGCATATGCAGTGGGCGTGGCTTCCAGAAAACTTGAGAATCCTGACGAATCAGATTGGTTAATGGTGAAGAAGATTTTAAGATACTTGAAAGGCACAAGTAACCTTGGTATCAAGTATCATAGGACAGACCAATCGACCAAAGACTTCATTGTTGGTTACAGTGACGCTGACCACGGAGGAGATCAGCAAACCGGGCGGTCAACCACGGGTGTGATATGTTTGTATGCTGGAGGAGCAGTATCATGGCTAAGCCAAAGACAAGCATCTGTGGCAATTTCAACAACAGAGGCCGAGATCGTTGCAGCCAGCGAAGCAACGAAAGAACTTGTTTGGCTACAACGAATATTCACCGATCTCACCGAGCTAAAAGAAGTTCCAATACTTCTAGTTGACAATGAAGCAGCAATTCGTCTGGCACACAATCCCGAGTTCCACAAGAGAACTAAGCATATAAGAATCAGACATTTCTTCGTAAGAGAAAAAGTTCTTGAAGGAAATATAATTGTGGAGCGTACTAGCACAACCAGCCAGTTAGCAGATATGCTAACAAAACCTATGCCAAGACCAAGGCTGATTCAGTTAAGAAatgaAGAAATAGATATCAAAGAAGAAAGTAGACCATTGCTCCATGAAGAAATTGATATCAAAGAAGAAATTGAAAGTGATAGCGATGGCGATGACAATAGACCATTGCTCACAAAACTAAGTGATGACTGTGAAATAGCCAACAGTAAGTCAACGCCTAAAAGGAGGAAAGACCTGATAACAATGAAGAAATGTTCTCTTGTTGCTGTGGATATTGCACCGACCTACTCCCAGCGCGTCGTGGACCCCGAGAACTTGGCGGGATTTAAGGTTGTCGCCAAGTCACAGATACTCCCGTGTGGCTTGTGCGGCGATCATTTCTTGAGCAAAAGGTCGTTACACAACCATATGCGCGGCGAGCACGTCGTCGCGACGCCCTACCTGTGCCACTACTGTGGGTTGAAATTCACATACAATTTCATGTTACTTGCGCATATGCGCGGGCATACCGACGGCTCGCTTGCCTATGATCAATGTTCCAAGCACTGCGCATCTACTCAATATCTCGCGACACATCTAAACACGCACTCACGAGAGCGACTTTTCTCTTGTCCTATCTGCGGGCGCCGCTACACAGTGTTCTGTAACCTCCAGCGACACGCCGAGCGGCACAAGAGATCCGATATCTTTCAATGCACCGTGTGTTCCGAATCATACCGCTCTATATTCGATCTGCGCCGCCATTCCGAGCGAGACCACGGCGAAAAAGTCGAGTTCCCATGTTACCTATGCGACCAGACTCTTTCTTCAAACCTAGAACATATCGCTCATGTGGAATCGCACGACAACGCGCAACTGATTTGCGCGTTCTGTTCTATGCGGTTCAATGATGTTCAAAAATGGGAGGAGCATTCAGCCGTCCACAAACAGCAGTTAGATGTCGTGCCCTTGAAGCCTTACGTTTGTGTCGTGTGTAAGATGGGTTTTGAGTACCGCAGATGTTTGACGGCCCACATGAAGCGTCATAATGAAGAGCGGCCGTATGGATGCAAGAAGTGTCACAAGACGTTTAAGACGAGAAGGTCTGTAAAAGAGCACGATAGGGGTCATGATCGGCCGTATCCTTGCACGGAGTGTCCCGCGCGCTTCGCCAGGCAGTACACGTTGTCGCAGCATTTGTTGGTGCACTCGGGAGAGCGTCCTCACGCGTGTCCGAGCTGCGGCCGCGCGTTCACGGAGGTCTCCACGATGCGGCGGCACGTGACGCGCGCCCACATGCCGGGGCTGAAGCGGGCGAGGGCTCCGAGGAAGAGTAAACAACAACGTGCAACCAGCCCTTAA
- Protein Sequence
- MDNLTTKLLIGNLDGKSNWSTWKYKICIALRSIPHALDIVEGRMTKPVNGEAAGAGDQLASFTKADCSALLLLTSNMTDETLQKVMRYNTAREVWLELHRLFDGTSEDKSYNLCMSFFGFKRNPEDDIATHMCKLKNIWTDLNLDLQKEKKELPELLLICKILDTLSEEYTSFKSSWLLVPKADRTIESLTNHLCAYERSIKGNSVPNEEALITSSNAVKEKKNKDKKIRCNYCSRIGHRVRNCQKWIQDGKPPKNSSALKGDSTPSTSHAVNMTVMFVQNEVLAVEHDKDNWYVDNGATSHITNRGDLFTTFQQFHDSHTVTTANGNILQAEGKGSIVLEANIKGKVSQVTLEDVWYVPGIQKNLFSVLAAHDKNSDSKFESTTENCSILINGTVKVVGKRQKFGGLYKLEVKNVIPKKMVTYLTTETQLYHERFAHQNKRHIRAFVKRELGIELPIDESTCESCLFGKSHRHKFSTRTRASQPGELIHSDVCGPFPNSITNLRYFVLFRDDYSGYRLIYFMKAKSEVKEKLKDMISEVRTTGHTIKTLLSDNGGEYDNKDVRDILAKNGIRQRLTMPYTPEQNGCCERDNRTLVEAARTIMYSGDGFPRALWAEIINTVAYIINRTGPSRVDSKSPYELWNGKKPKITHLKIIGSTCYSHIPKQKRQKLSKKAYKGRLVGYDNDDGYRIWAAVENNKYRLVRSRDVIFDEKPLYRANAEIEIPEISRHTPTPNALEIRLEPPVSSRPTLIFGEPIRNENEHSSLQEEDNTLSFDFEGESIVEDLINSAQEPSLSDERSEQLVIADEGAPAEPEEFFDIVPHNHNLRQRSTLRAPAKLDDYVCNINSSANPENYREAIESPQKEKWKEAMEKELASLKDNDVWMLSALPPKRKALSSKWVFRIKRNPDGSIDKYKARLVVKGFKQRKGVDYDQTFSPVARMGTIRALISVAAKERLVLTQFDVSTAFLYGKLQEEIYMQQPDGFDDGSNRVWKLKRSLYGLKQAPRCWNSCFAEILLDLDFKQCDADSCLFVKNVNGKKLLITLYVDDGLVAATDAEVTDAFLADLRKKLKITTKPASYYLGLEIEQDSDGSITIKQESYTKKILERFHMADCNPLSTPIQKESVTSNTESEKVVEQRKDFPYREAVGALSYLMVGTRPDIAYAVGVASRKLENPDESDWLMVKKILRYLKGTSNLGIKYHRTDQSTKDFIVGYSDADHGGDQQTGRSTTGVICLYAGGAVSWLSQRQASVAISTTEAEIVAASEATKELVWLQRIFTDLTELKEVPILLVDNEAAIRLAHNPEFHKRTKHIRIRHFFVREKVLEGNIIVERTSTTSQLADMLTKPMPRPRLIQLRNEEIDIKEESRPLLHEEIDIKEEIESDSDGDDNRPLLTKLSDDCEIANSKSTPKRRKDLITMKKCSLVAVDIAPTYSQRVVDPENLAGFKVVAKSQILPCGLCGDHFLSKRSLHNHMRGEHVVATPYLCHYCGLKFTYNFMLLAHMRGHTDGSLAYDQCSKHCASTQYLATHLNTHSRERLFSCPICGRRYTVFCNLQRHAERHKRSDIFQCTVCSESYRSIFDLRRHSERDHGEKVEFPCYLCDQTLSSNLEHIAHVESHDNAQLICAFCSMRFNDVQKWEEHSAVHKQQLDVVPLKPYVCVVCKMGFEYRRCLTAHMKRHNEERPYGCKKCHKTFKTRRSVKEHDRGHDRPYPCTECPARFARQYTLSQHLLVHSGERPHACPSCGRAFTEVSTMRRHVTRAHMPGLKRARAPRKSKQQRATSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -