Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977958.1:8675512-8686626[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0053 0.68 12.5 0.8 1 23 173 195 173 195 0.99

2 8 0.0061 0.78 12.3 1.8 1 20 199 218 199 221 0.91

3 8 4.8e-05 0.0061 18.9 2.7 1 23 226 249 226 249 0.97

4 8 0.075 9.5 8.9 0.1 1 23 255 278 255 278 0.89

5 8 0.34 43 6.8 0.5 1 23 284 307 284 307 0.93

6 8 0.014 1.8 11.1 0.6 3 23 315 335 313 335 0.92

7 8 8.3e-05 0.011 18.2 1.7 1 23 341 363 341 363 0.97

8 8 0.024 3.1 10.4 6.0 1 23 369 391 369 391 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0053	0.68	12.5	0.8	1	23	173	195	173	195	0.99
2	8	0.0061	0.78	12.3	1.8	1	20	199	218	199	221	0.91
3	8	4.8e-05	0.0061	18.9	2.7	1	23	226	249	226	249	0.97
4	8	0.075	9.5	8.9	0.1	1	23	255	278	255	278	0.89
5	8	0.34	43	6.8	0.5	1	23	284	307	284	307	0.93
6	8	0.014	1.8	11.1	0.6	3	23	315	335	313	335	0.92
7	8	8.3e-05	0.011	18.2	1.7	1	23	341	363	341	363	0.97
8	8	0.024	3.1	10.4	6.0	1	23	369	391	369	391	0.98

Sequence Information

Coding Sequence: atgtcaatagatgcttatttttgtttttgctgCTTATCAACCAATGACTTAATTAATTTGTTTAGTGATAAACCCGATTTAAACTACGGCGAAATGCTTAAAGAGTTGTATTCGGTACAACCGTTGCAAGAAGAATATGAAGATGACAGTTACATCTGCGAGGACTGTGCTCGGTGCCTGCGAGAGACGCAGAGTTTCAAACGGCAAGTCTTTGACACACTGAATGCTCTGCAGGTTAATGGATtaattAAACTAAACAAGAAAGCAGATTGCACGCTTGTGACAAAAGTGTGTAGTGAGTCTGTGTCGGACGGGGATGTGAAATACAATGTTGAAGAGAAAACACTGACACTCACTATAGAGGAAGTCAAGCAAGACATAACATATAAAGACATAGAAAAAGATATACCAGAGCAGCCCATATCACTAGAAAGGGAGAAACGCATCACAGTTGCCCGGAAGCGGAAGAAAGAGCCGGCTGTAAAGAGTGAGATGCAGTATGAGGTGACAGAAGACTTCAAATGTACGGAGTGTGGTGTGGTGATGCCGAATCAGTATGTGTATCATGCACATATGAACAAACACTTTCCTAATCATATATGCGAGACATGCGGAAAAGGTTTTCTGACTAAGAAGAGACTGAAACGCCACATGCCTTCCCACATCAAAGGCCCCTTCAAATGTGACCAGTGTGGCACGGAGTTCAGGAACTATAACTCTTTGAATTCACACAGACAGCGCAAGCACAAATCGATCGCCCTGTACGCTTGCCCGCGCTGCCCCGAGCGCTTCGCGACGCtgacgcggcgcgcgcgccacctCGCCGCGCGGCacggtgcgcgcgcgccgcacagCTGCGCGCTCTGCGCACAAGCGTTCCTACTCGCAGGAAACCTGTCAACACACATGCGCAACAAACATTTCAAAGAGAAACGCCACTTCTGCATCGAGTGCGGCGCGGGGTTCTTCCAGAAGCAGGAGTTACGAGGCCACATGGCGACACATACGGGAAGGAACGAGTTCCATTGCTCGCTCTGCTCCAAGAGTTATCCCCGCAAGAAGGCGCTGGACGTGCATATGCGAGGCCACCGCGACGAGCGTCGCTTCCACTGCGGGCTCTGCGGCAAAAAGTTCCTGCAAAAATGCACCTTAACCACACACGCCAAGACACACAATCCCGTGGATGAACAGAAGAAAGCGTCATAA
Protein Sequence: MSIDAYFCFCCLSTNDLINLFSDKPDLNYGEMLKELYSVQPLQEEYEDDSYICEDCARCLRETQSFKRQVFDTLNALQVNGLIKLNKKADCTLVTKVCSESVSDGDVKYNVEEKTLTLTIEEVKQDITYKDIEKDIPEQPISLEREKRITVARKRKKEPAVKSEMQYEVTEDFKCTECGVVMPNQYVYHAHMNKHFPNHICETCGKGFLTKKRLKRHMPSHIKGPFKCDQCGTEFRNYNSLNSHRQRKHKSIALYACPRCPERFATLTRRARHLAARHGARAPHSCALCAQAFLLAGNLSTHMRNKHFKEKRHFCIECGAGFFQKQELRGHMATHTGRNEFHCSLCSKSYPRKKALDVHMRGHRDERRFHCGLCGKKFLQKCTLTTHAKTHNPVDEQKKAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00148823;
90% Identity: iTF_00660793;
80% Identity: -