Ebru061371.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977959.1:16178232-16191945[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0044 0.56 12.7 4.7 1 23 39 61 39 61 0.98 2 12 0.18 23 7.7 1.1 1 23 73 95 73 95 0.96 3 12 0.58 74 6.1 0.5 3 23 102 123 102 123 0.96 4 12 1.6e-05 0.002 20.4 1.2 2 23 133 155 132 155 0.97 5 12 0.00083 0.11 15.0 1.2 1 23 162 185 162 185 0.94 6 12 0.081 10 8.8 0.8 6 23 197 214 197 215 0.95 7 12 0.16 20 7.8 0.1 1 13 224 236 224 238 0.89 8 12 0.081 10 8.8 0.8 6 23 287 304 287 305 0.95 9 12 0.16 20 7.8 0.1 1 13 314 326 314 328 0.89 10 12 0.081 10 8.8 0.8 6 23 377 394 377 395 0.95 11 12 7e-05 0.0089 18.4 1.9 1 23 404 426 404 426 0.98 12 12 0.12 15 8.3 2.2 1 23 431 454 431 454 0.89
Sequence Information
- Coding Sequence
- ATGGCTCTTTTCATTCTTCGGTCCTGCCTTTTTGTCCCCAAATTGACTTACGCATTAAGGAGGCCGGCGTATCTGAAGAAACATGTGGCGCAGCAACACACGAAGGGGCAGCGCCACGAGTGCCCGATCTGCGCGCGAGTGTTCTTCCATCGCGGCATGTTTAAGACGCACTTTAGGAGACACAACGAAGAAGTCCGCAACCCAATCAAGCAGCTCTTCATCTGTGACACCTGTTGCACCCAGCTCAAGAGCAAAGCGGCGCTGCGGCGGCATCTAGCCGTGCACGCCGTCCGCAACCTCGGCTGCGGACTGTGTCCCGCGCTGTTCCAGACCAGGCGGGGGCTCAAGTTACACCAGATGAACAAACACACCGACCAGAAAGAACGGATGCTGCAACAATGTCCGCAATGCGATCGAGAGTGCACGACCCCCGCGCTGCTGCGGCAGCACATACGGCGGATGCACACTGATAGGACCAAGAAGTACCAATGCGACCACTGCAAGCGCTTCTACTACAGCAAAGGCGAGGTCCGCGCCCACATAGCCTGGTCCCACACTCCGAGCCGCGGCGACCGAGCTCTGTTCTGCTGCGGCCGCGAGTTCCGCACCAGGACCCGGCTGAGGGACCACGTCGCCATCCACCATCTGAAGGTCGAGAGGCAGAGGATACACAAGTGCGACCAGTGCGAGAAGGCTTTCGCGGACCCGGCTGAGGGACCACGTCGCCATCCACCATCTGAAGGTCGAGAGGCAGAGGATACACAAGTGCGACCAGTGCGAGAAGGCTTTCGCGGTGAGTCAGTTGAGAACATTCTTCACAATACCCTTCACCTTGGACACGCCCGAGCTCTGTTCTGCTGCGGCCGCGAGTTCCGCACCAGGACCCGGCTGAGGGACCACGTCGCCATCCACCATCTGAAGGTCGAGAGGCAGAGGATACACAAGTGCGACCAGTGCGAGAAGGCTTTCGCGGACCCGGCTGAGGGACCACGTCGCCATCCACCATCTGAAGGTCGAGAGGCAGAGGATACACAAGTGCGACCAGTGCGAGAAGGCTTTCGCGGTGAGTCAGTTGAGAACATTCTTCACAATACCCTTCACCTTGGACACGCCCGAGCTCTGTTCTGCTGCGGCCGCGAGTTCCGCACCAGGACCCGGCTGAGGGACCACGTCGCCATCCACCATCTGAAGGTCGAGAGGCAGAGGATACACAAGTGCGACCAGTGCGAGAAGGCTTTCGCGAACAAACAGGTCCTCAACCGCCACGTAAAGAGCCACTCCAACTTCACGTACCCCTGCCCCGAGTGCGGGCTCCGCTTCAAGTGCGAGGCCTACGTCAAGGTCCACCACCAGCTAAAGCATCTCCACATGACCAGGGCCCAAATAAAGGCTCTCAAGCAGACCAAAACACCCCCAACACACGTAGAACACATCCAAGATGAACCCCAAGACTTGAGCATGAGCCAAGAATTGAAGGAAATATGTTTCGAGAAAGTGGTTGTGAAACAGGAATATGATAGTGATGGTGAGGCGCCGCAGTTCAATTTCGTGGAGAAGTGA
- Protein Sequence
- MALFILRSCLFVPKLTYALRRPAYLKKHVAQQHTKGQRHECPICARVFFHRGMFKTHFRRHNEEVRNPIKQLFICDTCCTQLKSKAALRRHLAVHAVRNLGCGLCPALFQTRRGLKLHQMNKHTDQKERMLQQCPQCDRECTTPALLRQHIRRMHTDRTKKYQCDHCKRFYYSKGEVRAHIAWSHTPSRGDRALFCCGREFRTRTRLRDHVAIHHLKVERQRIHKCDQCEKAFADPAEGPRRHPPSEGREAEDTQVRPVREGFRGESVENILHNTLHLGHARALFCCGREFRTRTRLRDHVAIHHLKVERQRIHKCDQCEKAFADPAEGPRRHPPSEGREAEDTQVRPVREGFRGESVENILHNTLHLGHARALFCCGREFRTRTRLRDHVAIHHLKVERQRIHKCDQCEKAFANKQVLNRHVKSHSNFTYPCPECGLRFKCEAYVKVHHQLKHLHMTRAQIKALKQTKTPPTHVEHIQDEPQDLSMSQELKEICFEKVVVKQEYDSDGEAPQFNFVEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -