Ebru063526.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977961.1:4769296-4805803[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.8 1e+02 5.6 0.9 1 23 157 180 157 180 0.95 2 19 6.6 8.3e+02 2.7 0.8 1 23 188 210 188 210 0.93 3 19 0.0011 0.14 14.7 0.1 2 20 242 260 241 262 0.94 4 19 0.019 2.4 10.8 1.0 2 21 269 288 269 289 0.92 5 19 0.0011 0.14 14.7 1.5 2 23 305 326 304 326 0.95 6 19 0.00053 0.068 15.6 0.3 1 23 331 353 331 353 0.98 7 19 0.00046 0.059 15.8 5.2 1 21 362 382 362 387 0.94 8 19 0.0021 0.26 13.8 1.7 1 23 395 418 395 418 0.92 9 19 0.0087 1.1 11.8 0.3 1 23 424 447 424 447 0.96 10 19 0.069 8.8 9.0 0.4 3 19 461 477 459 478 0.89 11 19 0.15 19 7.9 0.9 1 23 491 514 491 514 0.96 12 19 0.15 19 7.9 0.9 1 23 529 552 529 552 0.96 13 19 0.15 19 7.9 0.9 1 23 567 590 567 590 0.96 14 19 0.15 19 7.9 0.9 1 23 605 628 605 628 0.96 15 19 0.15 19 7.9 0.9 1 23 643 666 643 666 0.96 16 19 0.15 19 7.9 0.9 1 23 681 704 681 704 0.96 17 19 0.15 19 7.9 0.9 1 23 719 742 719 742 0.96 18 19 0.15 19 7.9 0.9 1 23 757 780 757 780 0.96 19 19 0.15 19 7.9 0.9 1 23 795 818 795 818 0.96
Sequence Information
- Coding Sequence
- ATGCACACCTTCCTCAACTCCCCGGCAGACCTAGCCATGTACTCTCGACAGCGGCTGACAGTCAACGAACCAGAGTTATCCGAGTTGCAGACCCCGTTGCAGATAGAAGTGGATGTCAGTGTGGTGAAGGATGAAACCAAGGAGGAAATAGCTGAATCGGAAACAGTAAAATCGGAGGCAGATTACTTCGAGAACGACTTTCTTCCGGAGCCGGCGTCTTCAGAGGATGATGTGCAGCTCTCCAAGCTcaagaagaagaaagaaagaaggatCAAGAAGGTGAAGAGGAGAGAGGACAGACAGAGGGTCAAGACTGAGGACACGAAACCAGAGAAAGTCCAGCAAAGGAACTACCGCAAGCTCAAGAATCTGCCGGCAGATTTGGTGGAGTTGTACACCATGGCGGAAGAGGAAATGTGGGAGGTACGGCAACAAGACGTGGAGAGTGCTGAGTTCTGCGCGCTTAAGTATAAGTGTAGTGACTGCATCATCGGGTTCAATTCCGAACGCCTCATGCACGACCACATGCAAGGGAAACATGCTCCGAAAAGCCCCGACTGCCACCAATGCGACGTATGCAAAGCCTACTTCCTGACCCTCGACAACGTGTCCAGCCACCGCGCGCTGCACCTCACCGCGTACCGCTGCACcgcgtgcggcgcgcgcgccggcctcaAGCGCCGCATGCTGGCCCACTCGCACACGCATCGCGACCAGGGCGTCACGTGTCCCACCTGCGGGGAGGAGTTTAGCACTAAATCCAAGCTGTCGTACCACCGCGGCGTGTGCAACCAGGCGCGGCCGCAGTGCGACTGCTGCGGGAAGGTGTTCGCCAACAAGATGACGCTCAAGTACCATCTCAAAATACTGCCTCAGAATAAAGATGAAAAGCCGAAGGAGAAGCTCTATATAACCTGCAAGGGCTGCAACAAAGTGTTCCACTCCAAAAAAAGCTACCGAGCGCATGTAGTAATACACGACGGACTGACATACCCTTGTCCTATATGCGGGAAACTTTTCCAGTGGAAACGGAATCTGGCTCGCCACACGAGGAACCACAGGGATCGCGACGCAGGCGCCACGCACGAGTGCCGCGACTGCGGCAAAACGTTCAGCAGCCGCGACTGTTACAATAACCATATGAAGCTCAGCAAGCGACACGTCCAAGAAGACGCTTATGTGCACGAGTGCTCGTACTGTGGCAAGAAATTTGCGACCAAATGGTGTATGGTCGATCACATAGACTGGGACCATCTCAAGCGGATTAAATACCAGTGCAGCGTGTGTTTCAAGGCATTCAAGACGGCGAAGATAATGGTGGCGCACATGAACAACATACACGAGGGCAAGAAAAACAGAGAGCCCGAGGGCGAGCACCTGTGCGAGATCTGCGGAAAATCATACAAGACGGTGAAGCGGCTGAAAGGGCACGTGTGGGCGATGCACACGAACCGCTCCACCAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACCTTCACGTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAAGCGCCCCAAGttggtaaacCGCTCCACCAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACCTTCACGTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAAGCGCCCCAAGttggtaaacCGCTCCACCAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACCTTCACGTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAAGCGCCCCAAGttggtaaacCGCTCCACCAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACCTTCACGTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAAGCGCCCCAAGttggtaaacCGCTCCACCAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACCTTCACGTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAAGCGCCCCAAGttggtaaacCGCTCCACCAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACCTTCACGTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAAGCGCCCCAAGttggtaaacCGCTCCACCAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACCTTCACGTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAAGCGCCCCAAGttggtaaacCGCTCCACCAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACCTTCACGTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAAGCGCCCCAAGttggtaaacCGCTCCACCAGCAAGAGCTTCAAGTGCAAGCTGTGTCCCGCCACCTTCACGTGGCAGACCTCCATCTACAAGCACGTCAAGATGATGCACGACAAGCGCCCCAAGCAAATCCGTCCCAAGAAGCAGGAGTACCCAGGTGCGGAGATAGTCGCGCGACACTACTTCCCGCAGCCCGACTTGTCGCATCTGCCGCTGCCCGTGCACAACATCAACATCGTGCACCACATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCAGAACATCGTGCACCACATTGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCATCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATACTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATATTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCGTGTACAGCATCGTGTATCACGACCAGAACATCGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATAGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATAGTGCACCACATCGTGTATCACGACCACAACATCTTGTACAGCATCGTGTATCACGACCACAACATCGTGTACAGCATCGTCTAA
- Protein Sequence
- MHTFLNSPADLAMYSRQRLTVNEPELSELQTPLQIEVDVSVVKDETKEEIAESETVKSEADYFENDFLPEPASSEDDVQLSKLKKKKERRIKKVKRREDRQRVKTEDTKPEKVQQRNYRKLKNLPADLVELYTMAEEEMWEVRQQDVESAEFCALKYKCSDCIIGFNSERLMHDHMQGKHAPKSPDCHQCDVCKAYFLTLDNVSSHRALHLTAYRCTACGARAGLKRRMLAHSHTHRDQGVTCPTCGEEFSTKSKLSYHRGVCNQARPQCDCCGKVFANKMTLKYHLKILPQNKDEKPKEKLYITCKGCNKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHTRNHRDRDAGATHECRDCGKTFSSRDCYNNHMKLSKRHVQEDAYVHECSYCGKKFATKWCMVDHIDWDHLKRIKYQCSVCFKAFKTAKIMVAHMNNIHEGKKNREPEGEHLCEICGKSYKTVKRLKGHVWAMHTNRSTSKSFKCKLCPATFTWQTSIYKHVKMMHDKRPKLVNRSTSKSFKCKLCPATFTWQTSIYKHVKMMHDKRPKLVNRSTSKSFKCKLCPATFTWQTSIYKHVKMMHDKRPKLVNRSTSKSFKCKLCPATFTWQTSIYKHVKMMHDKRPKLVNRSTSKSFKCKLCPATFTWQTSIYKHVKMMHDKRPKLVNRSTSKSFKCKLCPATFTWQTSIYKHVKMMHDKRPKLVNRSTSKSFKCKLCPATFTWQTSIYKHVKMMHDKRPKLVNRSTSKSFKCKLCPATFTWQTSIYKHVKMMHDKRPKLVNRSTSKSFKCKLCPATFTWQTSIYKHVKMMHDKRPKQIRPKKQEYPGAEIVARHYFPQPDLSHLPLPVHNINIVHHIVYHDQNIVHHIVYHDQNIVHHIVYHDQNIVHHIVYHDQNIVHHIVYHDQNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDQNIVHHIVYHDQNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDQNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDHNIVHHIVYHDQNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDHNILHHIVYHDHNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDHNIVHHILYHDHNIVHHIVYHDHNIVHHIVYHDHNIVYSIVYHDQNIVHHIVYHDHNIVHHIVYHDHNIVHHIVYHDHNIVHHIVYHDHNILYSIVYHDHNIVYSIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -