Ebru064640.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977961.1:17426243-17466244[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.05 6.4 9.4 1.6 1 23 471 493 471 493 0.99 2 12 0.052 6.6 9.4 1.5 1 23 553 576 553 576 0.96 3 12 0.031 3.9 10.1 0.1 2 23 582 604 581 604 0.96 4 12 0.031 3.9 10.1 0.1 2 23 637 659 636 659 0.96 5 12 0.031 3.9 10.1 0.1 2 23 692 714 691 714 0.96 6 12 0.031 3.9 10.1 0.1 2 23 747 769 746 769 0.96 7 12 0.031 3.9 10.1 0.1 2 23 802 824 801 824 0.96 8 12 0.046 5.9 9.5 0.9 3 23 924 944 923 944 0.97 9 12 1e-06 0.00013 24.2 3.3 1 23 950 972 950 972 0.98 10 12 0.00029 0.036 16.5 0.5 1 23 978 1001 978 1005 0.97 11 12 0.00022 0.028 16.8 0.1 1 23 1011 1034 1011 1034 0.97 12 12 0.0015 0.19 14.2 0.1 1 21 1044 1064 1044 1065 0.95
Sequence Information
- Coding Sequence
- ATGAAGAAAATGTTCAACGATAGTTACGATGCTGGCCACTCGGCAGTGCCACCACCCGGGCTGGTGCCAGAGCTGCTGGCATGCCGTGCGTGCCTCGCCACGGATACGAAGTTGTACACACTGGACGGAGCCCTGAAGGAGGCGTATGAGTATCTGATGGCCATGCCGCACATCTGCAACTACTGCGGCACCTTGCTTCACAAGTACCGAGCGCTGAAGGAGCGCTGCGTCACCGCGCGCCGGCTCGCGCAGGCTCATGCACACTACCCTTTAACCACGAATATGGTGCGCAAAGTCGATAGAGTATCGCACAAGCTTCTCCTCAAATTCACACTCGGCATAGACACTAAGATCATACATATGGTACATGAAGATAACGATAATAATAGAGGCAAGGAATATAACCAACATGAAGGAAAAACTATAGATGACGACGACACAGACGGACTTACAGACGTTCTTaatgattttgatgaaatcacgAATACGCTGAACGATGATGTACACCTAGACTTAAGCGAGGATGAATTTGATGTGAACGATGGACCTCTTATAGACAGAGCTAAAAACTTCAATGTCGAGGAACTGTTTAAGGGGAAAGAAATTGATGATGTAAATGAAATtagcaataaaaatattagtaatgatATTGGGGATATCATTCAAAGAGCGTTTATGGGCAAAGATAAAGCTGTTACAAAATCGATTCATAACGAAAACCTTGTTGCTGTTAAAAATGAAGATACTAGCAGCACATTTCGTGACGCTGAAGAAGTACTCAAGGCTAACTTGACTGATAATCTGCCTCCAGATGATGTTTCCATAAACACTAATGATTTTAATGACACCGATTCAAATTTAGTTGATGCTTTCAATAATTTCATTTTGGACCACGACTATTTAGACGAAAAGTTCCTGCTTGAGTCTGGTGATACAGAATTTATGAAAAAACACGTGATTTCTAAGAAAACGGATGAAGATTCCTTACTCAAAGAGATCATTCCTAGTATGACAATGaaagacaaaaaacatttaaaagaaAGAGACTCGCAACAGTATAAGAAAACTAAACCTGTTAAAAATCTATCGAAACTTAAAGAAATCAACAGACGAGCTAAACTAAAGATCAAAACCGCATTTAAAGAATCTAAAAATCAACTAATTAACTGTAAATCGATTAAAATGGAAGACTCCGAATCTTACCCTAAAACTGACGGTGATAAATCTAATTCAAAGCCTATAATGACCAAACCAGAGCTACCAACAGATGACACAGTGAAATCAGAGCTGTCTAAAGAATTTATCAAATTCGGAGCCGACTTTAACTTCAGGATATTCGAGTTGAGTACAGAAGAGCAGTTAGAGGAGTTGCAGAAGAAGAGAGAAGGAGTGCTGTATCTGGGCGCTCCGTATAAATGTGTGGATTGTGCAAAAGGGTTCCACTCGGCACAGACTTTTGGGAATCATAAGCGAGTTCATGATCCGAGCTACGGCCAGTTCCCGTGCGCGGTTTGTCGCGCGCGACACAAGTCGGACGCGCGGCGCCGCCGGCACGCCGACACGCACCGGCTCAAGTACTGTTGCACACAGTGCGAGTTCGTGGCTCGCAGCAGGGAGCGCGCAGAACAGCACTGCCAGTGGCACGCCGGGAAGAAATTCTCGTGTCAGCACTGCGGCGAGCAGTTCGGGAAAGTATCGACGCAGCTGTCTCACATACGGCTGCAGCACCCGGGCGCCTGCGTGCGGTGCGCGCTGTGCGGGGAGCCCTTCGTCGGAGCCCTGGGGCTGCGGCAGCACACGCGGCGCAAGCACACGCAGCCTTGGGGCTGCGGCAGCACACGCGGCGCAAGCACACGCAGGTACACTGAGCTGTCCCACATCCGGCTGCAGCACCCGGGCGCCTGCGTGCGGTGCGCGCTGTGCGGGGAGCCCTTCGTCGGAGCCCTGGGGCTGCGGCAGCACACGCGGCGCAAGCACACGCAGCCTTGGGGCTGCGGCAGCACACGCGGCGCAAGCACACGCAGGTACACTGAGCTGTCCCACATCCGGCTGCAGCACCCGGGCGCCTGCGTGCGGTGCGCGCTGTGCGGGGAGCCCTTCGTCGGAGCCCTGGGGCTGCGGCAGCACACGCGGCGCAAGCACACGCAGCCCTGGGGCTGCGGCAGCACACGCGGCGCAAGCACACGCAGGTACACTGAGCTGTCCCACATCCGGCTGCAGCACCCGGGCGCCTGCGTGCGGTGCGCGCTGTGCGGGGAGCCCTTCGTCGGAGCCCTGGGGCTGCGGCAGCACACGCGGCGCAAGCACACGCAGCCCTGGGGCTGCGGCAGCACACGCGGCGCAAGCACACGCAGGTACACTGAGCTGTCCCACATCCGGCTGCAGCACCCGGGCGCCTGCGTGCGGTGCGCGCTGTGCGGGGAGCCCTTCGTCGGAGCCCTGGGGCTGCGGCAGCACACGCGGCGCAAGCACACGCAGGTGGCAAAAAACGAAGAGTGTGCCGAGCGTCGCATCCAGTTCCGCAACGCGGAATCATTCCGCCGGCACTCTGCCGCGGACCGCACACACTCGACACTTCGCCCGTGCACAGAGTCGGAGCAGGCGCGGAGTCACTCGGACGCGCCCGTGCAGTGCCACTCGTGTTCGGCATGGTTCTCGTCCGCGCACTCGCGGCAGACGCACTTCGAGCGCGCGCACTCGCGCGTGCCGCCgtgcgccgcgcccgcgcagcccCGCGCGCGCGCACAGACCGCCGCCAAGCGCGCCATGTGCGAGCTCTGCGGGAACAAGTACCATTCTGCCGCCGCGCTCTCGTATCACCGGCGGACCCACACGGGCGAACGTCCGTTCGCGTGCCCGCGCTGTCCCAAGAGCTTTACACACAATCACACCCTGCAGGCGCACATACGGACTCACACCGGCGAGCGGCCGTACCGCTGctcgcagtgcgcgcgcgcgttccccaccgccaacaacctcgcgcgacacaacaggattGCGCACATACGCACGCACACCGGCGAGCGGCCGTACCGCTGCTCGCAGTGTGCGCGCGCGTTCCCCACCGCCAACAACCTTGCGCGACACAACAGGATTGCGCACATACGCACGCTCACCGGCGAGCGGCCGTACCGCTGctcgcagtgcgcgcgcgcgttccCCACCGCCAACAACCTCGCGCGACACAACAGGATTGCGAACATTGTTGAAAGGTACAACCAGGTGGTGCTTACCACGCTGAGCATTTTGGTGGCTGGGGATCAGCGTAGTTGGCCGATTCATTTACCTCGGGTGGCTTTGTACTTGAACTCGTGCATTAACCTGGCGACTTCTTACACACCGAATTTCTTGATGTACGGTCGTGAGGTGGTGGTTGATCGGCAGCGTGTCGATGACCAGATTGAGGACCAACAGGTGGGACTCAGTCGGGCCGAACGCGCTGCAAATCTCCTCACCTTACGTGAAGTATACGCAAAGGTGGCTGATTCGATGGTTTTGGCGTTCCACCGTAACGCCAGGAAATTCAACGAGAACCGGAAGACGGTGCACCTGGGACAGCGGCAGTACTCGCGCTGCGCCGTGTGCCGCCGTTGGCTGTCgtcgccggcggcggcgcgggcgcacgcTCGCCTCGTGCACGGGGACAGGCTGTAG
- Protein Sequence
- MKKMFNDSYDAGHSAVPPPGLVPELLACRACLATDTKLYTLDGALKEAYEYLMAMPHICNYCGTLLHKYRALKERCVTARRLAQAHAHYPLTTNMVRKVDRVSHKLLLKFTLGIDTKIIHMVHEDNDNNRGKEYNQHEGKTIDDDDTDGLTDVLNDFDEITNTLNDDVHLDLSEDEFDVNDGPLIDRAKNFNVEELFKGKEIDDVNEISNKNISNDIGDIIQRAFMGKDKAVTKSIHNENLVAVKNEDTSSTFRDAEEVLKANLTDNLPPDDVSINTNDFNDTDSNLVDAFNNFILDHDYLDEKFLLESGDTEFMKKHVISKKTDEDSLLKEIIPSMTMKDKKHLKERDSQQYKKTKPVKNLSKLKEINRRAKLKIKTAFKESKNQLINCKSIKMEDSESYPKTDGDKSNSKPIMTKPELPTDDTVKSELSKEFIKFGADFNFRIFELSTEEQLEELQKKREGVLYLGAPYKCVDCAKGFHSAQTFGNHKRVHDPSYGQFPCAVCRARHKSDARRRRHADTHRLKYCCTQCEFVARSRERAEQHCQWHAGKKFSCQHCGEQFGKVSTQLSHIRLQHPGACVRCALCGEPFVGALGLRQHTRRKHTQPWGCGSTRGASTRRYTELSHIRLQHPGACVRCALCGEPFVGALGLRQHTRRKHTQPWGCGSTRGASTRRYTELSHIRLQHPGACVRCALCGEPFVGALGLRQHTRRKHTQPWGCGSTRGASTRRYTELSHIRLQHPGACVRCALCGEPFVGALGLRQHTRRKHTQPWGCGSTRGASTRRYTELSHIRLQHPGACVRCALCGEPFVGALGLRQHTRRKHTQVAKNEECAERRIQFRNAESFRRHSAADRTHSTLRPCTESEQARSHSDAPVQCHSCSAWFSSAHSRQTHFERAHSRVPPCAAPAQPRARAQTAAKRAMCELCGNKYHSAAALSYHRRTHTGERPFACPRCPKSFTHNHTLQAHIRTHTGERPYRCSQCARAFPTANNLARHNRIAHIRTHTGERPYRCSQCARAFPTANNLARHNRIAHIRTLTGERPYRCSQCARAFPTANNLARHNRIANIVERYNQVVLTTLSILVAGDQRSWPIHLPRVALYLNSCINLATSYTPNFLMYGREVVVDRQRVDDQIEDQQVGLSRAERAANLLTLREVYAKVADSMVLAFHRNARKFNENRKTVHLGQRQYSRCAVCRRWLSSPAAARAHARLVHGDRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -