Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977936.1:45677257-45703623[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.002 0.25 13.8 0.1 3 23 424 444 421 444 0.94

2 7 1.9e-05 0.0025 20.2 7.5 1 23 450 472 450 472 0.97

3 7 3.6e-09 4.6e-07 31.9 0.6 1 23 478 500 478 500 0.99

4 7 2.9e-05 0.0037 19.6 0.5 1 23 506 528 506 528 0.98

5 7 0.015 2 11.0 0.2 1 23 534 555 534 555 0.81

6 7 0.0013 0.16 14.4 0.1 1 23 561 583 561 583 0.97

7 7 1.8e-05 0.0023 20.2 1.4 1 23 589 611 589 611 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.002	0.25	13.8	0.1	3	23	424	444	421	444	0.94
2	7	1.9e-05	0.0025	20.2	7.5	1	23	450	472	450	472	0.97
3	7	3.6e-09	4.6e-07	31.9	0.6	1	23	478	500	478	500	0.99
4	7	2.9e-05	0.0037	19.6	0.5	1	23	506	528	506	528	0.98
5	7	0.015	2	11.0	0.2	1	23	534	555	534	555	0.81
6	7	0.0013	0.16	14.4	0.1	1	23	561	583	561	583	0.97
7	7	1.8e-05	0.0023	20.2	1.4	1	23	589	611	589	611	0.99

Sequence Information

Coding Sequence: ATGCGTGCAACCTCTGCGAAAAGCGGTGAGTGTGCACGCCACCTGCCGGGCGAACGGTGTGGCAGCGCGCGCGGGTGCACTCCGGCCAGCCCCCGCCGCGCGCGCATGCGTGCAACCTCTGCGAAAAGCGGTGAGTATGCACGTCACCTGCCGGGCGAGCGGtgtggcggcgcgcgcgcgtgcaCTCCGGCCAGCCCCCGCCGCGAGCGCATGCGTGCAACCTCTGCGAAAAGCGGTGAGTGTGCACGCCACCTGCCGGGCGAACGGTGTGGTGGCACGCGCGCGTGCACTCCGGCCAGCCCCCGCCGCGCGCGCATGCGTGCAACCTCTGCGAAAAGCGCGGTGAGTGTGCACGACACCAGCCGGGCGAACGGTGTGGTGGCACGCGCGCGTGCACTCCGGCCAGCCCCCGCCGCGAGCGCATGCGTGCAACCTCTGCGACAAGCGGTGAGTGTGCACGACACCAGCCGGGCGAACGGTGTGGTGGCACGCGCGCGTGCACTCCGGCCAGCCCCCGCCGCGCGCGCATGCGTGCAACCTCTGCGAAAAGCGGTGAGTGTGCACGCCACCTGCGGGGCGAGCGGTGTGGCGGCGCGCGCGGGTGTACTCCGGCCAGCCCCCGCCGCGCGCGCATGCGTGCAACCTCTGCGACAAGCGGTGAGTGTGCACGCCACCTGCCGGGCGAACGGTGTGGTGGCACGCGCGCGTGCACTTCGGCCAGCCCCCGCCGCGCGCGCATGCGTGCAACCTCTGCGAAAAGCGGTGAGTGTGCACGCCACCTGCCGGGCGAGCGATGTGGCGGCGCGCGCGGGTGCACTCCGGCCAGCCCCCGCCGCGCGCGCATGCGTGCAACCTCTGCGACAAGCGGTGAGTGTGCACGACACCAGCCGGGCGAACGGTGTGGTGGCACGCGCGCGTGCACTCCGGCCAGCCCCCGCCGCGCGCGCATGCGTGCAACCTCTGCGAAAAGCGGTGAGTGTGCACGCCACCTGCCGGGCGAGCGATGTGGCGGCGCGCGCGGGTGCACTCCGGCCAGCCCCCGCCGCGCGCGCATGCGTGCAACCTCTGCGACAAGCGGTGAGTGTGCACGACACCAGCCGGGCGAACGGTGTGGTGGCACGCGCGCGTGCACTCCGGCCAGCCCCCGCCGCGCGCGCATGCGTGCAGCCTCTGCGAAAAGCGGTGAGCGTGCACGCCACCTGCCGGGCGAGCGACGGCAGCCTACTGGCGGCGCACGTGGCGCGGCACACGGGCGAGCTGCCGTGCGGCTGCGCCGTGTGCGGCAAGCGCTTCCCCTCCGCGCGGTTACTCGCCTCGCACGCGCTCGTGCACTCCGACAACAAGCCGCATGCATGCCACGTCTGCGACAAACGGTTCCGTCACGAGTCGACGCTGCGCACGCACCTGCGGACGCACACGGGGGAGAAGCCCTACGTGTGCTCCGTCTGCGGCAAGACCTTCATACAGAACTCCAACCTCACGCTGCATATGCGGACGCACACTGGTGAACGTCCGTATTCCTGCTCGGTGTGTTCGCGGCGCTTCACGTCGGGCTCGTCGCTGAAGGCGCACGCGCGGATTCACACCGGCGAGAAACCATACAGCTGCGAGCTCTGCGGAAAGCGGTTCGCCCGGCTGGACGTGCGCGCGCACCTGCGGCTGCACGCGGGCGAGCGCCCGTTCGCGTGCTCGGCGTGCCCCAAGGCCTTCGTCAGCGCGGCGCGTCTGCGCGACCACACGAGGATACACACCGGTGAGAAGCCGTACGAGTGTGCCATGTGCCCACAAAAGTACCCGACCAGATCCCACCTAGTCAAGCACCTGAAGACCCACGAGACCAAACAGAAGAAACCCAGCCATAACCTCGTCATTCTCCAACGCGTCGACAAAATCTACACCGATGATGTCACCCTCGAGCTACCCAAAGACAATGATATAGGTCAAGACGTCCCACTGGAAGTCACCGGTGAGCTAGTTCTTCAGGAGAACGGTGAGATCAAAACTGAGTTGCTGGTCGTCGATGAACAGAATACGAACGTATGCCTGAGCGATGGTTTCGTGGGCGAGTACAGTGAGGCGCCGGAACACGGGGTCAAGCTGTACCAACTCGATCAGAGCTTGCTGCAGATACACAGCGCGGGCGGACAGGTCACAATCAGCCAGATTACTAGCAAAGTCACTGCTaacttttaa
Protein Sequence: MRATSAKSGECARHLPGERCGSARGCTPASPRRARMRATSAKSGEYARHLPGERCGGARACTPASPRRERMRATSAKSGECARHLPGERCGGTRACTPASPRRARMRATSAKSAVSVHDTSRANGVVARARALRPAPAASACVQPLRQAVSVHDTSRANGVVARARALRPAPAARACVQPLRKAVSVHATCGASGVAARAGVLRPAPAARACVQPLRQAVSVHATCRANGVVARARALRPAPAARACVQPLRKAVSVHATCRASDVAARAGALRPAPAARACVQPLRQAVSVHDTSRANGVVARARALRPAPAARACVQPLRKAVSVHATCRASDVAARAGALRPAPAARACVQPLRQAVSVHDTSRANGVVARARALRPAPAARACVQPLRKAVSVHATCRASDGSLLAAHVARHTGELPCGCAVCGKRFPSARLLASHALVHSDNKPHACHVCDKRFRHESTLRTHLRTHTGEKPYVCSVCGKTFIQNSNLTLHMRTHTGERPYSCSVCSRRFTSGSSLKAHARIHTGEKPYSCELCGKRFARLDVRAHLRLHAGERPFACSACPKAFVSAARLRDHTRIHTGEKPYECAMCPQKYPTRSHLVKHLKTHETKQKKPSHNLVILQRVDKIYTDDVTLELPKDNDIGQDVPLEVTGELVLQENGEIKTELLVVDEQNTNVCLSDGFVGEYSEAPEHGVKLYQLDQSLLQIHSAGGQVTISQITSKVTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -