Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977963.1:12200275-12210889[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.15 19 7.9 4.4 1 23 16 38 16 38 0.97

2 9 1.1e-06 0.00015 24.0 3.2 1 23 84 107 84 107 0.96

3 9 0.0076 0.97 12.0 0.0 2 23 113 134 113 134 0.95

4 9 6.5e-06 0.00083 21.6 2.9 1 23 140 162 140 162 0.98

5 9 0.0067 0.86 12.1 2.6 3 21 169 187 168 189 0.96

6 9 8.5e-07 0.00011 24.4 1.5 1 23 198 220 198 220 0.99

7 9 2.4e-06 0.00031 23.0 0.9 1 23 226 249 226 249 0.95

8 9 0.0019 0.24 13.9 2.2 1 23 255 278 255 278 0.93

9 9 0.034 4.3 9.9 0.3 1 23 286 309 286 309 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.15	19	7.9	4.4	1	23	16	38	16	38	0.97
2	9	1.1e-06	0.00015	24.0	3.2	1	23	84	107	84	107	0.96
3	9	0.0076	0.97	12.0	0.0	2	23	113	134	113	134	0.95
4	9	6.5e-06	0.00083	21.6	2.9	1	23	140	162	140	162	0.98
5	9	0.0067	0.86	12.1	2.6	3	21	169	187	168	189	0.96
6	9	8.5e-07	0.00011	24.4	1.5	1	23	198	220	198	220	0.99
7	9	2.4e-06	0.00031	23.0	0.9	1	23	226	249	226	249	0.95
8	9	0.0019	0.24	13.9	2.2	1	23	255	278	255	278	0.93
9	9	0.034	4.3	9.9	0.3	1	23	286	309	286	309	0.91

Sequence Information

Coding Sequence: ATGGTGGTAAAATTAAAAGTGTTAGgCTCAAATCCCAAGACATACTATGAATGCGCCCACTGTAAACTGCTCTTCAAGCATCCGAAGAGGTTCCTTGTACATACAAAATGGCACTCGTTCGGGCTGACCAACGAGAAACGTCAGGAGTTGGTCAGAGAAAGAGAACTTAAGAAAACTATGAAGAAAGAAGCGAGGATTATTGAAAGATTGAATTCCAAAGAAGTGAAAGAAGGCGCCGAGGGCGAAGTGCATCCGTGTAAAGATTGTGACAAGGTTTTTACAGTCAAGAGCAGTCTCAAGAACCACCGGCAGAGGTACCATCCAACGCGCGTCCGTGAATGTAAGATCTGCAAGGCATCTGTGGTCGGATGGATGCAGTTAAGAGCACACATGGCTGCACATACAGGGACTGCGGGTTACCAGTGCAGCGAGTGCCCTAAGCGGTTCAAATACGCTCACTCTCTGGCCAAACATAAGGACACGCATCTGGAGAAAACCCACGGTTGCCAGCAGTGTGAGAAGAAATTCGGCTCGCAAGCGTTGCTTAAGATGCATATGAAATGCCACGAACGAACCGCCAGAGGGGCCACCTTCAGATGTACATACTGTGGCAAGGGATTTTTCGAGAGCTACAACTTACAGGTACACGAGCGCACGCATCGAAACGAACGTCCGTTTCTCTGCGAGATCTGCAAGACTAGCTTTGGAACGAACTCCAGTCTCAAGCGGCATATTAAAGTtTCCCACAGCACTCTAAAACCCTTCCCGTGCCCCACGTGCCACCGCTGCTTCGCGTCGTCGACGACCCGCGCGCGgcacgcggcgcgcgcgcacggcgACCCCGCCGCCTTCCCGCACGCGTGCCGCGTCTGCCCGCGCCGGTACCGGGCGCTCAAGGAGCTGGCCAAGCATGTGGGCAAGGCGCATCCGGAGACGAGGGAGTGA
Protein Sequence: MVVKLKVLGSNPKTYYECAHCKLLFKHPKRFLVHTKWHSFGLTNEKRQELVRERELKKTMKKEARIIERLNSKEVKEGAEGEVHPCKDCDKVFTVKSSLKNHRQRYHPTRVRECKICKASVVGWMQLRAHMAAHTGTAGYQCSECPKRFKYAHSLAKHKDTHLEKTHGCQQCEKKFGSQALLKMHMKCHERTARGATFRCTYCGKGFFESYNLQVHERTHRNERPFLCEICKTSFGTNSSLKRHIKVSHSTLKPFPCPTCHRCFASSTTRARHAARAHGDPAAFPHACRVCPRRYRALKELAKHVGKAHPETRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -