Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977956.1:7822203-7846624[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 9.1e-05 0.012 18.0 2.4 1 23 155 177 155 177 0.98

2 9 1.9e-05 0.0024 20.2 0.9 1 23 183 205 183 205 0.98

3 9 6.5e-06 0.00083 21.6 1.7 1 23 211 233 211 233 0.98

4 9 0.00026 0.033 16.6 0.1 1 23 239 262 239 262 0.97

5 9 0.00054 0.069 15.6 0.3 1 23 268 290 268 290 0.98

6 9 6.5e-06 0.00082 21.6 0.8 1 23 296 318 296 318 0.97

7 9 0.013 1.6 11.3 2.6 1 23 324 347 324 347 0.94

8 9 0.0016 0.2 14.1 0.1 1 23 358 381 358 381 0.97

9 9 0.00013 0.016 17.6 3.3 1 23 387 409 387 409 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	9.1e-05	0.012	18.0	2.4	1	23	155	177	155	177	0.98
2	9	1.9e-05	0.0024	20.2	0.9	1	23	183	205	183	205	0.98
3	9	6.5e-06	0.00083	21.6	1.7	1	23	211	233	211	233	0.98
4	9	0.00026	0.033	16.6	0.1	1	23	239	262	239	262	0.97
5	9	0.00054	0.069	15.6	0.3	1	23	268	290	268	290	0.98
6	9	6.5e-06	0.00082	21.6	0.8	1	23	296	318	296	318	0.97
7	9	0.013	1.6	11.3	2.6	1	23	324	347	324	347	0.94
8	9	0.0016	0.2	14.1	0.1	1	23	358	381	358	381	0.97
9	9	0.00013	0.016	17.6	3.3	1	23	387	409	387	409	0.97

Sequence Information

Coding Sequence: ATGTCCCTCGAAGCAGTGAATGTGAAAGATGAATGCAGTGACGATGGCTGCGCGACAGAAGCGGCGGACCTGCAAAGTGGACTACACGTCGCGCCGGAAGAGGAAGACCCGCTGTACATGAACTGTGTGTACATTAAAATTGAGCCGGAGATTGAAATGGAAGAACTAGAGTGCAAGCAGGAACCAGAATGTCTGAACGAGAGGCCAGAGTATCCGAACGGGATTTATATGAAACGAGACGCCAACCATGTGAAGAAAGAACCCGTTCTGGGACTGGAGCGCCCGCAGGCGTCCCAAGCCTTTGAGAGCTGCGtgttCGACATCCAAGTGCAACGCCTCACGGAAGAGGAAGCAAATGACTCGTGTGACACGTCCTCACAGCCGGACCCCGCCCTGCCTCACACGCCAGAGTTCGATCAGTTAGGTTTAAACCCACAAAAACATGCCCAAACAGGAAAACTGCACACCTGCGATGTATGCTCGAAACAATTCACGAGACTAAACAGTTTGAAGGAACACGAACGAATACACACCGGACAAAAACCATTCACGTGCGACGTCTGCCAAAAACCGTTCAGACGATTAGGCACTTTAAAAACCCATAAGCTAGTCCACACGCAAGTAACAATGTACCCTTGCGGTAAATGTGATAAAACGTTTATGCGGAAGACTACTTTGAAAATACATGAGCGAAGACACACTGGAGAGAAACTTTACTCGTGTGATATATGTAATATACAGTTCGTGCAAATTGGCAATCTGAACGTACATAATCGGAGGATCCACACGGTGGGCAAACGGTACTTTTGTAAAGTGTGTAATGAGGGGTACGTCTTTAGGAAAGAGTTGGCGGCGCATAGACGAGTTCACGCAGGAGAGAGAAATTATCAGTGCGACGTGTGTGACCGAAAGTTTGCGAGGCAAGATTCTTTGAATATGCATAAACTGAACCACCCGGAAGGAAAATTGCACCCCTGTGATGTATGCGAGAAAGAATTTATGACAATTAACCATTTACTTCGTCACAAAACTTCGTCTCACGCGGGGGGGATCAAAGAAACTTTAAAGCCCTACGCCTGCGAAATATGTGATAGAGAATTTGCTGAAGAGAATGATGTAAAGGACCATCAGAAACGAGTTCACAACGGACAGACGCCCCACGAATGTGACGTTTGCAAGAAAAAGTTTCGGAGATTAGGCGACATGAAGACGCATAGAAAAGTTCACTCTGATGAGAAGCCGTTTGCCTGCCAAATACATTCGTTGTTCCAACTCCATAATTTGATGAAAGTGTATTCTCTGCGCCGTGCACATAATTGCGGCTCCGTGTGTGGATCAGTGGTTCCTGACATGTCGATGGACGTTTGCGTGAAGGAGGAACAGaagaatgagaatgagaatgcGGGCGAGAGTGAGGCGTCACCGGCTCCGGAGCGGTTTCTTGAAGTATGCATTAAGATGGAAGCAGATTTCGTAAAGGAGGAGCGAGTGAAACGGGAACAGGAGTGGGAGGGAGATGTAACCCGTATGACAATGGAGCCAGAACTCTTGACAGAAGACCCAGTGAGAGTGAAGGAAGAGCTTGAACAaggtgagtga
Protein Sequence: MSLEAVNVKDECSDDGCATEAADLQSGLHVAPEEEDPLYMNCVYIKIEPEIEMEELECKQEPECLNERPEYPNGIYMKRDANHVKKEPVLGLERPQASQAFESCVFDIQVQRLTEEEANDSCDTSSQPDPALPHTPEFDQLGLNPQKHAQTGKLHTCDVCSKQFTRLNSLKEHERIHTGQKPFTCDVCQKPFRRLGTLKTHKLVHTQVTMYPCGKCDKTFMRKTTLKIHERRHTGEKLYSCDICNIQFVQIGNLNVHNRRIHTVGKRYFCKVCNEGYVFRKELAAHRRVHAGERNYQCDVCDRKFARQDSLNMHKLNHPEGKLHPCDVCEKEFMTINHLLRHKTSSHAGGIKETLKPYACEICDREFAEENDVKDHQKRVHNGQTPHECDVCKKKFRRLGDMKTHRKVHSDEKPFACQIHSLFQLHNLMKVYSLRRAHNCGSVCGSVVPDMSMDVCVKEEQKNENENAGESEASPAPERFLEVCIKMEADFVKEERVKREQEWEGDVTRMTMEPELLTEDPVRVKEELEQGE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -