Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977958.1:13665852-13667735[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.11 14 8.3 1.5 1 23 50 72 50 72 0.96

2 16 0.083 11 8.7 0.0 2 23 101 123 100 123 0.93

3 16 0.56 72 6.1 0.2 2 23 144 166 143 166 0.91

4 16 0.00074 0.094 15.2 2.1 2 23 172 194 171 194 0.95

5 16 0.0037 0.47 13.0 0.9 1 23 199 222 199 222 0.96

6 16 0.22 28 7.4 0.1 2 23 225 247 224 247 0.95

7 16 0.014 1.8 11.2 1.6 2 22 254 274 253 274 0.94

8 16 0.0034 0.44 13.1 0.3 1 23 333 356 333 356 0.95

9 16 0.43 54 6.5 0.0 3 23 385 406 383 406 0.92

10 16 0.047 6 9.5 0.7 3 23 430 452 428 452 0.95

11 16 0.0016 0.2 14.1 0.5 3 20 459 476 457 480 0.90

12 16 0.011 1.4 11.5 0.4 1 23 485 508 485 508 0.97

13 16 0.001 0.13 14.7 0.4 2 23 514 536 514 536 0.94

14 16 5e-05 0.0064 18.8 4.7 1 23 540 563 540 563 0.97

15 16 0.00022 0.028 16.8 0.6 2 23 570 591 569 591 0.96

16 16 0.0084 1.1 11.8 3.1 1 23 597 619 597 619 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.11	14	8.3	1.5	1	23	50	72	50	72	0.96
2	16	0.083	11	8.7	0.0	2	23	101	123	100	123	0.93
3	16	0.56	72	6.1	0.2	2	23	144	166	143	166	0.91
4	16	0.00074	0.094	15.2	2.1	2	23	172	194	171	194	0.95
5	16	0.0037	0.47	13.0	0.9	1	23	199	222	199	222	0.96
6	16	0.22	28	7.4	0.1	2	23	225	247	224	247	0.95
7	16	0.014	1.8	11.2	1.6	2	22	254	274	253	274	0.94
8	16	0.0034	0.44	13.1	0.3	1	23	333	356	333	356	0.95
9	16	0.43	54	6.5	0.0	3	23	385	406	383	406	0.92
10	16	0.047	6	9.5	0.7	3	23	430	452	428	452	0.95
11	16	0.0016	0.2	14.1	0.5	3	20	459	476	457	480	0.90
12	16	0.011	1.4	11.5	0.4	1	23	485	508	485	508	0.97
13	16	0.001	0.13	14.7	0.4	2	23	514	536	514	536	0.94
14	16	5e-05	0.0064	18.8	4.7	1	23	540	563	540	563	0.97
15	16	0.00022	0.028	16.8	0.6	2	23	570	591	569	591	0.96
16	16	0.0084	1.1	11.8	3.1	1	23	597	619	597	619	0.97

Sequence Information

Coding Sequence: ATGGGTACATTTACAGTAGAGAATTTCTTTTCAGATGTAAAACCGCGGAAATACAAAGGCTGCGAATCGTCCTCGATGCGCAGACGAAAAAACCTCACTATACTGTTCAACAACACCTCAATCATACCCTTCAAATGGAGGGGGAAATATCTATGCTTCTATTGTAGTAAAGACATATCCGAATATAACGCTCTTAGAAAACATACCAAGTCCCACGGAAATTGTTCCACCCGCGACCATTCCTTAAAAGTTCTCAAAGGAGGCCAAAATATGGAAATTAAAATCGACATCTCCGCAATCTCTTGCGAAATTTGCAGCGAACCTTTCCCAACTTTCGATGATATAATCACTCATTTGTTTATCAAACATAAGTTACAGTATGATAGAGGCGTCGAAATGGCCATAGAAGAGTACAGGCTAGTCAATCTTAGTTGTTTAGCTTGCGAAGAGAAATTCACTTACTTCGGTTACCTAGTCTCACACGTGAATAATAGCCATCCCAAAAACTGTCTCATCTGTGATAAGTGCGAACAGAAGTTTAATAAGAAACGAGATCTCTTCTCGCATATGAAGAACTACCATAGAGAAGGAGGATACCAGTGCGAACTCTGCCCTTTAACTTTCAGCTCTCTAAATATACTTAGGAAACATAGGAATAATCGTCATTTGACTAGGTGCAGCATTTGCCAATTAAAACTGCCTTCAGCGGCTTTAAAACAAAAGCATATGGAGGTAGAACATCCTGATGATGGGTCTTTGCAATGTGATAATTGCTTCAAAGAGTTTCACACGAAGCAAGGCCTTCGAATGCATGTTAGGAAGTGTAAAGGTGAAGACGAGTTCAATGTAGAAAGGAAAAAAGACTACGATCCTATGGATCTAGATCAGAATTATGAGGATCCTGTAAAAAGACCGAGCGTCAAACAAATCCGGGAGAATATAGTTATAGTAATCAATATGTCAACAGCTATTCCGTTTAATTTCTATAAGAACAAATTTAACTGCTTCTACTGTTCCAAAGACTTTCCCGATTCAGATCTAATGCGAGAACACACTATAATAGAACACCCTACTTGTGATGTAAAGCAGAAATGCATTAGGAAATGTAGGGAGTCTGTAGCGTGCGTTAAAATAGACATTTCTTCCCTAGCCTGCAAACTTTGCTTCGAGTCCTTACCAGACTTGGATACGCTTATCGACCATCTGATCTTAAAACATGACGCCAACTACGACAAGTCTATAACGACCTGTCTACAGCCGTACAGGCTCATCAAAGACCACATGGCCTGTCCTCATTGTCCAGACGAAGTCTTCAGATTCTTCGGTACCCTGTTAAAACACATGAACAACAAACACACTAACAATAACATTATTTGCGTGTATTGCGGTCAAACTTTCAGGCGCGACCAGAACTTGCGTGTCCACGTCTGGCGTCACCATAGGGACGGTAGATTCAAATGTAACATCTGTGGCGCGGAGTGTAATATACCTTCGAGGTTATACATGCATATGGCGAAAGCTCACGGGGTCAAAGCGGCGAAATGCCCTAAATGCTCAGAGAGTTTCGCCACACAATACCTAAGACAGAAACATTTAATTGAAGCTCATGATTCGGGGCACAAGTGTTCTTATTGCGGTAAATTATTCACGAGAAACTCTTTCATGAGAGACCATATAAGGAGAACGCATCTGAAGGAGAAAAACGTAGAATGCTCCATCTGTAACATGAAGTTCTTCAACAATATTCTTCTCAGGCGCCATATGGTGAAGCATAGCGGTGAGAAGAATTTTCACTGCGATGTATGTGGGGAACGATTCTTCTGGAGGAAGAGTCTTCGAACGCATATGTCTAGGCATAATAAGCATAATCCTGTACATATGTAG
Protein Sequence: MGTFTVENFFSDVKPRKYKGCESSSMRRRKNLTILFNNTSIIPFKWRGKYLCFYCSKDISEYNALRKHTKSHGNCSTRDHSLKVLKGGQNMEIKIDISAISCEICSEPFPTFDDIITHLFIKHKLQYDRGVEMAIEEYRLVNLSCLACEEKFTYFGYLVSHVNNSHPKNCLICDKCEQKFNKKRDLFSHMKNYHREGGYQCELCPLTFSSLNILRKHRNNRHLTRCSICQLKLPSAALKQKHMEVEHPDDGSLQCDNCFKEFHTKQGLRMHVRKCKGEDEFNVERKKDYDPMDLDQNYEDPVKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDLMREHTIIEHPTCDVKQKCIRKCRESVACVKIDISSLACKLCFESLPDLDTLIDHLILKHDANYDKSITTCLQPYRLIKDHMACPHCPDEVFRFFGTLLKHMNNKHTNNNIICVYCGQTFRRDQNLRVHVWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCSESFATQYLRQKHLIEAHDSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSICNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMSRHNKHNPVHM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01198043;
90% Identity: iTF_01136052;
80% Identity: -