Basic Information

Insect: Epinotia brunnichana
Gene Symbol: su(Hw)
Assembly: GCA_963854355.1
Location: OY977952.1:12338073-12352569[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0038 0.48 12.9 0.1 2 22 23 43 23 43 0.95

2 12 3e-05 0.0038 19.5 4.0 1 23 62 85 62 85 0.97

3 12 0.00037 0.048 16.1 1.0 1 20 120 139 120 141 0.95

4 12 8e-07 0.0001 24.5 0.1 1 23 152 175 152 175 0.96

5 12 5.5 7e+02 3.0 9.1 1 23 181 204 181 204 0.95

6 12 0.00012 0.016 17.6 0.1 1 23 211 233 211 233 0.97

7 12 0.027 3.4 10.3 0.1 1 23 238 260 238 260 0.98

8 12 6.7e-06 0.00085 21.6 1.6 1 23 266 288 266 288 0.98

9 12 5.4e-05 0.0068 18.8 0.2 3 23 293 313 292 313 0.97

10 12 0.17 22 7.7 0.1 3 23 321 346 319 346 0.89

11 12 0.00066 0.084 15.3 3.3 1 23 352 374 352 374 0.99

12 12 8.4 1.1e+03 2.4 0.7 3 23 382 405 381 405 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0038	0.48	12.9	0.1	2	22	23	43	23	43	0.95
2	12	3e-05	0.0038	19.5	4.0	1	23	62	85	62	85	0.97
3	12	0.00037	0.048	16.1	1.0	1	20	120	139	120	141	0.95
4	12	8e-07	0.0001	24.5	0.1	1	23	152	175	152	175	0.96
5	12	5.5	7e+02	3.0	9.1	1	23	181	204	181	204	0.95
6	12	0.00012	0.016	17.6	0.1	1	23	211	233	211	233	0.97
7	12	0.027	3.4	10.3	0.1	1	23	238	260	238	260	0.98
8	12	6.7e-06	0.00085	21.6	1.6	1	23	266	288	266	288	0.98
9	12	5.4e-05	0.0068	18.8	0.2	3	23	293	313	292	313	0.97
10	12	0.17	22	7.7	0.1	3	23	321	346	319	346	0.89
11	12	0.00066	0.084	15.3	3.3	1	23	352	374	352	374	0.99
12	12	8.4	1.1e+03	2.4	0.7	3	23	382	405	381	405	0.82

Sequence Information

Coding Sequence: ATGCCACCTAAACGTAAAAGACTGGGGCGGCCTCCGGGCTCCAAGAAAAAGGTTCATGTAAAAAATGAATGCAATTACTGTTCTGTTTCTTTGAGGACCAAGGCTGATTTGGTGAAACATTTGCGCGTATGCAAACAGAAGAAGCTGGTTAAGCTTACCGATGTTGACGCCAAAAAGGCCTTGTTTAGCTGTACAGAATGCAACAAGAAATTCAGGTTCCAGAGCAGTTTTTCCAAACATCTGAAGATGGAGCATTCAAAGCTACCAGCAGCAGTGAGCTGTAAGCAGTGCATAGTGCGCTGTCCTGACGGGCGAGCCCTTAAAGAGCATATTGCCAATGTGCACGAGAGGGAGATATTCGAGTGTGAACATTGTAAGAAGCAGTTCGTCAGACGCGCTCATGTGCTGCGCCACATTGCTCAGAAGGGCTGTGATGGAACGGGAATTCATATGTTCCCTTGTGAAATATGTGATGCCTCATTCACCCGCAAAGACAACCTGATAGTGCACCTGCGCCTGCAGCACATCAACAAGAATAGGTTCCACTGCAAACACTGCTCCTACCACACCAAGAACTTCTCCAAACTCATCATTCACAACCAGAGGAACCACTTagAACCAAATAATTACTTTGAGTGTGACAAATGCGGCAAAGTGACGAGCTCGAGGGCCGCCATGGCCAAGCATTTAGAAATCCACGGGGAAAAGAAATACGAATGTGATGTGTGTGGCTACAGCACGTACACGATAGAGGTGATCCGACGCCACGTCCTGACGCACGTCGAGGACAAGCCATACAAGTGCGCCATCTGCGGACACTCGTACATCCAGCGCTCTCAGCTGCAGCGCCACCTCGTGAAGCACACCGGCAACATGTGCGCCAAGTGCGGCGCCACCTTCAAGTCCAAAGCCAGTTTAATAATACATCAGCGGGAGCACATGGGACTGGAGAAGCTGTACTGCCCGTACGATGATTGTCCTTACGCCAAAAAGGAATTTAGCAACGAGGTGGGCCTCACCAATCACGTGAAGAGTCATTTAGACGACAGACCGTACCAATGCGCGGTGTGCAAGAAGCGCTTCCACAGCGAGATCAACCAGCGCCGCCACATGCTCACGCACCAGCTGGACCGGCCGCGGCGCTGCATGTACTGCGTGAGCGCGCGCGCGTACGTGCGCGGCGAGCAGCTCGTCAAGCATGTTCGCAAGTGCCATCCGGACCTGTTCCGCGCGCACTTGAGCCACGTGCGACGCGTGCTGGGCACAAACAACAAAATCGATCGCGTGAAGAAATCCGAGATGGACTCGGTCCTGAACGTCCTGGACGCGGAGTCCGAGCGCATCCTGCAGGGCTACGGCGAGGGCGTGCTGTACGGCGGCGTGCAGGAGGTGGAGCCCGGCGCCGAGGAGGTGGAGGTGCCGCTCAAGGGCTACGGCGAGGGCGTGCTGTACGGCGGCGTGCAGGAGGTGGAGCCCGGCGCCGAGGAGGTGGAGGTGCCGCTCAAGGTACAGTTCATGAAGACCGGAGTCCGAGCGCATCCTGCAGGGCTACGGCGAGGGCGTGCTGTACGGCGGCGTGCAGGAGGTGGAGCCCGGCGCCGAGGAGGTGGAGGTGCCGCTCAAGGTACAGTTCACGAAGACCGGAGTCCGAGCGCATCCTGCAGGGCTACGGCGAGGGCGTGCTGTACGGCGGCGTGCAGGAGGTGGAGCCCGGCGCCGAGGAGGTGGAGGTGCCGCTCAAGGTACAGTTCACGAAGACCGGAGTCCGAGCGCATCCTGCAGGGCTACGGCGAGGGCGTGCTGTACGGCGGCGTGCAGGAGGTGGAGCCCGGCGCCGAGGAGGTGGAGGTGCCGCTCAAGGGCTACGGCGAGGGCGTGCTGTACGGCGGCGTGCAGGAGGTGGAGCCCGGCGCCGAGGAGGTGGAGGTGCCGCTCAAGAGTGAAAACAGCCCACTGATGTCTGAGGATGAGTTGGCCGACAGCCTGAAGAAATTGCTGACGCAGCTCATTGACGTCGAAAAGCTCGAGTGCTTCGGATGGCCCGACGAGAGCGTCGATGTGGTCCTAGAGAAAGTGATTGAGCAatgcggcgcccgcgccgccgacCGGGCGCGCTGGTCGCGCGTGCAGCGTCTGCGCGAGAACACCAAGCAACTATTCCTGTACGTCATCGAGGACGCCAACATCGCGCGCATGCTCGACACGCACACCATCGACCAGATCGTCAACCACATCCTGACGCAGGTCGCCGAGACCGAGGGCGCTCTAATATAG
Protein Sequence: MPPKRKRLGRPPGSKKKVHVKNECNYCSVSLRTKADLVKHLRVCKQKKLVKLTDVDAKKALFSCTECNKKFRFQSSFSKHLKMEHSKLPAAVSCKQCIVRCPDGRALKEHIANVHEREIFECEHCKKQFVRRAHVLRHIAQKGCDGTGIHMFPCEICDASFTRKDNLIVHLRLQHINKNRFHCKHCSYHTKNFSKLIIHNQRNHLEPNNYFECDKCGKVTSSRAAMAKHLEIHGEKKYECDVCGYSTYTIEVIRRHVLTHVEDKPYKCAICGHSYIQRSQLQRHLVKHTGNMCAKCGATFKSKASLIIHQREHMGLEKLYCPYDDCPYAKKEFSNEVGLTNHVKSHLDDRPYQCAVCKKRFHSEINQRRHMLTHQLDRPRRCMYCVSARAYVRGEQLVKHVRKCHPDLFRAHLSHVRRVLGTNNKIDRVKKSEMDSVLNVLDAESERILQGYGEGVLYGGVQEVEPGAEEVEVPLKGYGEGVLYGGVQEVEPGAEEVEVPLKVQFMKTGVRAHPAGLRRGRAVRRRAGGGARRRGGGGAAQGTVHEDRSPSASCRATARACCTAACRRWSPAPRRWRCRSRYSSRRPESERILQGYGEGVLYGGVQEVEPGAEEVEVPLKGYGEGVLYGGVQEVEPGAEEVEVPLKSENSPLMSEDELADSLKKLLTQLIDVEKLECFGWPDESVDVVLEKVIEQCGARAADRARWSRVQRLRENTKQLFLYVIEDANIARMLDTHTIDQIVNHILTQVAETEGALI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -