Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977958.1:22012042-22018992[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0018 0.22 14.0 0.8 6 23 2 19 1 19 0.97

2 11 0.00024 0.03 16.7 0.1 1 23 25 47 25 47 0.97

3 11 0.018 2.3 10.8 3.1 1 23 158 180 158 180 0.98

4 11 0.00032 0.041 16.3 3.1 1 23 207 228 207 228 0.98

5 11 1.8e-05 0.0023 20.3 0.9 1 23 234 256 234 256 0.99

6 11 4.7e-06 0.0006 22.1 2.6 1 23 262 284 262 284 0.98

7 11 7.5e-07 9.6e-05 24.6 1.9 1 23 290 312 290 312 0.99

8 11 3e-07 3.8e-05 25.9 1.8 1 23 318 340 318 340 0.99

9 11 3.6 4.6e+02 3.6 0.1 9 23 354 368 352 368 0.93

10 11 2.5 3.1e+02 4.1 0.7 8 20 381 393 375 395 0.91

11 11 1e-06 0.00013 24.2 0.8 1 23 549 571 549 571 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0018	0.22	14.0	0.8	6	23	2	19	1	19	0.97
2	11	0.00024	0.03	16.7	0.1	1	23	25	47	25	47	0.97
3	11	0.018	2.3	10.8	3.1	1	23	158	180	158	180	0.98
4	11	0.00032	0.041	16.3	3.1	1	23	207	228	207	228	0.98
5	11	1.8e-05	0.0023	20.3	0.9	1	23	234	256	234	256	0.99
6	11	4.7e-06	0.0006	22.1	2.6	1	23	262	284	262	284	0.98
7	11	7.5e-07	9.6e-05	24.6	1.9	1	23	290	312	290	312	0.99
8	11	3e-07	3.8e-05	25.9	1.8	1	23	318	340	318	340	0.99
9	11	3.6	4.6e+02	3.6	0.1	9	23	354	368	352	368	0.93
10	11	2.5	3.1e+02	4.1	0.7	8	20	381	393	375	395	0.91
11	11	1e-06	0.00013	24.2	0.8	1	23	549	571	549	571	0.99

Sequence Information

Coding Sequence: ATGTGTACAAAGCGATTTACGCAATTGAGTGCTCTCGAGACGCACAAACGAATGCACGCAGGTGCAAAACCGTATTCGTGCAAAATATGTAAAATGACGTTTATTCAATTGGGTGCTTTAAATGTTCATGAACTCATTCACGCGGAAGAAAAAAGCGCGCGGGGCGAGTTGTACGCGCGGGGCGAGTTGTACGCGCCGGGCGAGTTGTACGCGCAGGTGACTAAGGACGAGCGTGTGCTTTGGCCAGGACGTACGCAGCGTCCCAACAAAGTCAATGCCCTTGGCGaaaaatCGCAGCCCGTGGTTTGTGACTACAGGCCTGCGCTCGAGCGCTGCGCCGTCACAACCCGCGAGCCCGCCGCGACCGCGGCCGCTGCACACCAACACCATGATACCACAGATGATACACTCGACACCGCACCACTACATACAGGCACCGACACCCTCCGACACACCGCGGAGACAAACACCTACAAGTGCGACACTTGCGgccaaatatttttacaaaagcATTGTCTAGTCGATCATGTTAAAGTCCATTTTCGGGAAGCATTAGAAACATTACCAAATGAGTCTTTATTCATCCGCGAACCCATCAGTGACATGAGTGTAAAGAAATATTCTtgcaaaatatgtaaaaaaaagtttcgaaAGAATTACTTAAAGATTCACGAGCGGATTCACACTGGGGAGAAACCTTATGTGTGTGAAGTATGTAAGAAAAAGTTTGCTTTTTTGGGCAATTTGAGAGATCACAAACGAATGCACACTGAGGAAAAGCCTTACTCATGTGAAGTATGTCGAAAGAGTTTCGCGAGATCGGATCATTTAAAAATGCACGAACGCAGTCACACTGGAGAAAAACCATACAGTTGCGAAACATGTAAAAAGGAATTCACGCAGTTAACTAATTTACAATCACATATACGAACACACACGGGAGAAAAACCTTATCGGTGCACGATGTGTGACAAGCAGTTCACACAGTGGAGCGCTCTTAATAATCATAAAAGGTCACACACATGCGAAAAAACATATCCGTGTGAcataagtaaaaataaatttaaacaacCGGGTACTTTAAATGTTCATAAAATTATACACACGATTGAAAAACCGTTTTCGTGCGAAACGTCTAAGAAGACTTTCAGAAAAAACAGCagttttgaaaaacataaacatgaagCAGTCAACGTGAAGGAAAAGTCCGAGATTGAGAGCAGTACAGACCCATGCGGAGCGAGCGAGACGCATAAGGAGACTCGCGTGAAGGAGGAGCCTAAGTGTGAGAGCAGTGCAGACCCATGCGGAACGAGCGAGACGCAGGCGAAGGAAGAACCTATGAGAGATAACCATGAGAGCAGTGCAAACTCTTACAGAGTGAGCGAGACGGATGATAGCGCCGACCACGTGATTAAGATTGAACTGGAGCTGGAGTTGGAGAACGTAAAGCGTGACATAGCTGTTGCGCCTTGCGCCGCTACGCCGCGCTGCTCGCTCCCCGCGACCGCGAGCGCCCGACAACCCGCGCCGCCGCGGGACACCAGCACGACACACGACAACACTCGGCCGGGGACCAAGGGGACACATGGCGTCACACTAAACCATTCGACCACCGACAAACAGGTGACGACCAAAAGGCCGTACACCTGCGACATATGTACAAAAGCCTTCACGCAATCAGGAAGTCTGAACACTCACAAACGCATACACACCGGTGAAAAACCATACTCATATGACGAAATCGAACAAAATGAACATAGTTCATCACCGGCTCATATCCCTATAATACCGGAATCGCAATTAAACAGCGAAATTCCGGCGCCTGAACATCCCGACGACGTTCCGGCGCCAGAACTGAATAACGATGTTTCCGTCGCTGAAAATCAGACGACAACGGCGGTTCAGCCTGAACTCGACCCGGACATGTTACTGGCACTCGGGGAATCGACAGACATACCCCAGAGACAGGAAGGTTACACGAATGGATGA
Protein Sequence: MCTKRFTQLSALETHKRMHAGAKPYSCKICKMTFIQLGALNVHELIHAEEKSARGELYARGELYAPGELYAQVTKDERVLWPGRTQRPNKVNALGEKSQPVVCDYRPALERCAVTTREPAATAAAAHQHHDTTDDTLDTAPLHTGTDTLRHTAETNTYKCDTCGQIFLQKHCLVDHVKVHFREALETLPNESLFIREPISDMSVKKYSCKICKKKFRKNYLKIHERIHTGEKPYVCEVCKKKFAFLGNLRDHKRMHTEEKPYSCEVCRKSFARSDHLKMHERSHTGEKPYSCETCKKEFTQLTNLQSHIRTHTGEKPYRCTMCDKQFTQWSALNNHKRSHTCEKTYPCDISKNKFKQPGTLNVHKIIHTIEKPFSCETSKKTFRKNSSFEKHKHEAVNVKEKSEIESSTDPCGASETHKETRVKEEPKCESSADPCGTSETQAKEEPMRDNHESSANSYRVSETDDSADHVIKIELELELENVKRDIAVAPCAATPRCSLPATASARQPAPPRDTSTTHDNTRPGTKGTHGVTLNHSTTDKQVTTKRPYTCDICTKAFTQSGSLNTHKRIHTGEKPYSYDEIEQNEHSSSPAHIPIIPESQLNSEIPAPEHPDDVPAPELNNDVSVAENQTTTAVQPELDPDMLLALGESTDIPQRQEGYTNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -