Ebru059485.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977958.1:13710746-13715191[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.029 3.6 10.2 4.9 3 23 2 23 1 23 0.94 2 19 1.9 2.4e+02 4.5 0.4 2 23 50 71 49 71 0.94 3 19 1.7 2.2e+02 4.6 1.0 2 23 94 116 93 116 0.93 4 19 0.0029 0.37 13.3 0.1 1 23 122 144 122 144 0.95 5 19 0.00029 0.037 16.5 1.8 1 23 152 175 152 175 0.94 6 19 0.061 7.7 9.1 0.4 1 23 180 203 180 203 0.92 7 19 0.0034 0.43 13.1 1.0 1 23 210 233 210 233 0.96 8 19 0.00022 0.028 16.8 0.5 1 23 239 261 239 261 0.94 9 19 0.0052 0.66 12.5 4.1 1 23 267 289 267 289 0.98 10 19 2.5e-08 3.2e-06 29.2 1.9 1 23 295 317 295 318 0.96 11 19 1.1e-05 0.0014 20.9 3.5 1 23 362 384 362 384 0.98 12 19 6.9 8.8e+02 2.7 1.1 2 23 411 432 410 432 0.93 13 19 0.21 26 7.5 0.6 2 23 454 476 453 476 0.96 14 19 0.014 1.8 11.1 0.4 3 23 484 505 483 505 0.95 15 19 0.47 60 6.3 0.8 1 23 510 533 510 533 0.84 16 19 0.0085 1.1 11.8 2.0 1 23 538 561 538 561 0.97 17 19 3.8e-06 0.00048 22.4 3.8 1 23 566 589 566 589 0.97 18 19 0.012 1.5 11.4 0.2 1 23 595 617 595 617 0.97 19 19 0.67 85 5.9 0.5 1 23 625 647 625 647 0.98
Sequence Information
- Coding Sequence
- ATGTGCTTCTACTGCGGCTGCCCTTTCGCAGACTGTACTGAACTCAAACATCACACCAAGGCAGAACATGAGGACGCCAAACTCAAAACAGTATTGAGGACAACAGTTGCTAAAAGCAGAAGCATTAAGCTTGACGTTTCAGAGCTGTCTTGCAAGAAATGCAAGGAACCTATGCGGAGTTTACAAGAGTTCCTCCTCCATATAGAACAACACGGTTTTAAATTCAATAAGGAAGCGACACACTGCTGTTACCCATTCATCCTTAAAGACCACGACTTGTCTTGTCTTGAATGTGGCACGCTCTTCAGATTCTTTGGGCCTCTTCTCATCCACACGCACAAATATCACAGCAAAACTGAGCCGTTCCTCTGTGAGATCTGTGGACAGGGCTTCATAGCGAAAGCCAACGTGGAAAGTCATCGAAAAGTGCATCGAAAACCAGCCACTTCTAACTACAATTGTAAGGAATGTAACGAAACGTTCCCTACACAGTATAAACTGACGTATCATTTCGAAAAGGTCCACACGCCAACCAAATTCAAGTGTCCTAAATGTCCTGAGATATTGGGCAGTAAATACTTGAAGAAGCGGCATTTGGCTTTTGTACACGACATGAAAAGCGCACAGTTTAAATGCGATCAGTGTGAGAAGATTTTCCCGTTGAAAAATAAGTTGCTACAGCATAAGCTACGCGTCCATTTGAAGGAGAGGAATTTCGCTTGTGAAATTTGTGGCTTCAAAGTGTTTAGTAAAGATCTGTTGAAGCGGCATATGGTGAAACATGACGATTCCCGCCCGTTTGAGTGTGATTTCTGTAAGAAAACCTTTCAAAGGAAGAAGACCTTGGAGTTCCATAGAAGGATTCATACCAACGACAAGAGGTATCAGTGTAAAGAGTGTGGAAGATCGTTTGTGCAGTGGACCAGCCTTAAGCTTCATATGAGAGTGCATCATTCGAAACCGAAGAAGCACGACATCCGAGTACCGACGCAGCTCGACTGGCAGAAGGACGCCGCGCGCCGCTACTGCCACTCCGTCCTCTCCCACTCCTCTCTCCTCCCCTTCCGTTGGCGCGGCAACCGCTACATCTGCTTCTACTGCCACTTCACCTTCTCCGATGCTTCTGCCCtgcgcacgcacacacgcacacaccaAAACCTGCAGATAATGAAGCACCTAACACAGACCAGGGAGTTCACTACTATAAAAGTCGATGTTGGAGAAACGCTGAAATGCCTAAAGTGTACCCATGAGGAGACTAGTTTAGAAGGCTTGATTTCGCATCTGAAAAGCCATAAAGTTGTAGGAGATATAGATCAGGAATGCTTCCTACCTTTTAAGTTGGCAGACAACCAGGTGTCTTGCTTGAAATGCGCGAAATCTTACCAATTTTTCGGTATGTTGTACTCGCATATGAATAAAGCTCATTTGGAGGGCACTGAGCGCATTTGTGAAGCTTGCGGGCAGAGCTTTTTCTCAGACTTCAGTCTGAGAAAGCATGTACAGTCGTACCATTCGACTGCTGATTTCAAATGCGGGCGCTGCAACGAAACTTTCAAGTTGGACGCTAACCGCATAAGCCACGAATATAAAGAGCATAACATAAAGACTTTCAAATGTTATAAATGCGAGGAAATGTTCGGTTCGCAGTACTTAAGGCGGTTACACATGCAGAGCACGCATCTAAAGGTCGAATTCACATGCAAGGACTGTTCTAAAACCTTTCCTCACAAAACCCAACTAACCAGACACGTGAACAGAGTACATTTGAAAGAGAAAAGCTTCTCTTGTGTCATTTGTGGTGACAAATTCTTTGATCTCGCCGGCTTGAACGTGCATACTAAGAAGCATTCGAAAACTGTGGATAAGATTTTTCAatgtaaagtttgtatggtatgTGTGGGGAGTAAGATGGAGTTGGATGATCATATGGTGACTCATGCGGGACAGTCGCTGTCACTAAAATAa
- Protein Sequence
- MCFYCGCPFADCTELKHHTKAEHEDAKLKTVLRTTVAKSRSIKLDVSELSCKKCKEPMRSLQEFLLHIEQHGFKFNKEATHCCYPFILKDHDLSCLECGTLFRFFGPLLIHTHKYHSKTEPFLCEICGQGFIAKANVESHRKVHRKPATSNYNCKECNETFPTQYKLTYHFEKVHTPTKFKCPKCPEILGSKYLKKRHLAFVHDMKSAQFKCDQCEKIFPLKNKLLQHKLRVHLKERNFACEICGFKVFSKDLLKRHMVKHDDSRPFECDFCKKTFQRKKTLEFHRRIHTNDKRYQCKECGRSFVQWTSLKLHMRVHHSKPKKHDIRVPTQLDWQKDAARRYCHSVLSHSSLLPFRWRGNRYICFYCHFTFSDASALRTHTRTHQNLQIMKHLTQTREFTTIKVDVGETLKCLKCTHEETSLEGLISHLKSHKVVGDIDQECFLPFKLADNQVSCLKCAKSYQFFGMLYSHMNKAHLEGTERICEACGQSFFSDFSLRKHVQSYHSTADFKCGRCNETFKLDANRISHEYKEHNIKTFKCYKCEEMFGSQYLRRLHMQSTHLKVEFTCKDCSKTFPHKTQLTRHVNRVHLKEKSFSCVICGDKFFDLAGLNVHTKKHSKTVDKIFQCKVCMVCVGSKMELDDHMVTHAGQSLSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00411708;
- 90% Identity
- -
- 80% Identity
- -