Ebru011733.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977936.1:45452266-45467992[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0017 0.22 14.0 0.1 2 23 159 180 159 180 0.94 2 19 0.026 3.3 10.3 2.1 3 23 186 206 186 206 0.98 3 19 0.28 36 7.0 4.3 3 23 213 234 211 234 0.96 4 19 0.018 2.3 10.8 0.3 2 20 243 261 242 265 0.93 5 19 0.00042 0.053 15.9 0.8 1 23 270 292 270 292 0.95 6 19 0.042 5.4 9.6 0.3 1 23 298 321 298 321 0.89 7 19 0.7 89 5.8 1.6 2 20 327 345 326 347 0.91 8 19 0.0029 0.37 13.3 0.2 3 23 353 371 351 371 0.96 9 19 0.00047 0.06 15.8 0.7 1 23 377 399 377 399 0.96 10 19 0.032 4.1 10.0 1.3 2 23 406 427 405 427 0.97 11 19 0.0011 0.14 14.6 0.9 1 23 438 460 438 460 0.96 12 19 0.032 4.1 10.0 1.3 2 23 467 488 466 488 0.97 13 19 0.0011 0.14 14.6 0.9 1 23 499 521 499 521 0.96 14 19 0.032 4.1 10.0 1.3 2 23 528 549 527 549 0.97 15 19 0.00047 0.06 15.8 0.7 1 23 560 582 560 582 0.96 16 19 0.032 4.1 10.0 1.3 2 23 589 610 588 610 0.97 17 19 0.00047 0.06 15.8 0.7 1 23 621 643 621 643 0.96 18 19 0.032 4.1 10.0 1.3 2 23 650 671 649 671 0.97 19 19 8.6e-06 0.0011 21.3 2.4 1 23 677 699 677 699 0.98
Sequence Information
- Coding Sequence
- ATGAATTGGTGTAGAGCGTGTTTGTCCTCGGACAAAGAAGTGTTTCAGTCTGATGATCATTTTGCTTGCAATTATAACTTGCTCACCAATATAAACgTACAATTTTCTGATGGGAAATCACAATGCTTCTGCCAAAACTGCATAGAAGCTGTCAAATGCTTCATAGAGTTCAGGAATAAATGTATTTCTGCTGAATCTACTTTACAAGGATATGAACAGACAGTAAAATCGGAGCCTAAAACTATTAAAGTGGAAATCAAATATGAAAAAGAAGATTACGTCCCTGAGCCTTATTTTGAGGATGATCAACATGACTACACTGAGGACTACAATACAATTAAGACAGAAAAATGTGCAGATGTCAAAGAAAAGAGACCAAGTAGACAGAGCAGTAAAAATACGATAAAAAGTGCAAAACAAAAGAAGGATGAGTCCTTAAGAGGTGACTTTGTTAAACTGTCAAACAGTAATCCTACTTGTGGATTGTGCAGTAAAGAATTCAAGGATGCAGCCTCACTAAGCAAGCACGTGGAAGGCCATGAGGTTGAAAAGGGTTGCCAGCTCTGCTCGGCCGCGTTCAAACACCGGGCGCAGCTGTTCTCGCACCGCATGCTGCACACTGTCAACCACCAGAACTGCCATCTGTGCTCTGTTAGATTCAGGTCACACGCGAACCTGGAATTCCATTATAGGAAAATACATTATGGGGAAAAGAATGTTACGCTGGAGTGTAATCTATGTGCAAAAAAGTTTAATACTCCTAGAAGATTAGCGAAACACATATGGAGTAATCACGGTAAAAATGAATACATCTGTGATATTTGTTCCAAAAAgtacaataataaacaaaaactgAAGTCCCACGTGATTGGCCACGGTGACGCCAAGCCGTTCGTCTGCGATTTGTGCGGGTATTGCAGTAAATACGCTGCTGGACTAGCGGCGCACAACGTAAGAAGGCACGCGCCTGCAAAGTGCATCTGCAAGGGGTGCGGCAGCGCGTTCGCGGACGCGGAGCGGATGGCGCGCCACACGTGCCACGACACCAGCCAGATCTGCCCCGTCTGCGGGAAGAGCGTGCGCCGCGGGCTCATCCGGCACATGCGCACGCACACCGAGGAACGTCACTTCAAGTGCGAGCGCTGCCCGGCCACGTACAAGAGCCGCTCCGCGCTGAAGGCGCACAGCGACAAGCACGACAACAACCCGCGCCAGGAGTGCGAGTTCTGCCACGTGCGGTTCTACTCCGGCTCGGTGCTGGTCAAGCATCGTCGCGTGCACACCGGCCAGCCGACCGCGTCAGGAACGCACTTCAAGTGCGAGCGCTGCCCGGCCACGTACAAGAGCCGCTCCGCGCTGAAGGAGCACAGCGACAAGCACGACAACAACCCGCGCCAGGAGTGCGAGTTCTGCCACGTGCGGTTCTACTCCGGCTCGGTGCTGGTCAAGCATCGTCGCGTGCACACCGGCCAGCCGACCGCGTCAGGAACGCACTTCAAGTGCGAGCGCTGCCCGGCCACGTACAAGAGCCGCTCCGCGCTGAAGGAGCACAGCGACAAGCACGACAACAACCCGCGCCAGGAGTGCGAGTTCTGCCACGTGCGGTTCTACTCCGGCTCGGTGCTGGTCAAGCATCGTCGCGTGCACACCGGCCAGCCGACCGCGTCAGGAACGCACTTCAAGTGCGAGCGCTGCCCGGCCACGTACAAGAGCCGCTCCGCGCTGAAGGCGCACAGCGACAAGCACGACAACAACCCGCGCCAGGAGTGCGAGTTCTGCCACGTGCGGTTCTACTCCGGCTCGGTGCTGGTCAAGCATCGTCGCGTGCACACCGGCCAGCCGACCGCGTCAGGAACGCACTTCAAGTGCGAGCGCTGCCCGGCCACGTACAAGAGCCGCTCCGCGCTGAAGGCGCACAGCGACAAGCACGACAACAACCCGCGCCAGGAGTGCGAGTTCTGCCACGTGCGGTTCTACTCCGGCTCGGTGCTGGTCAAGCATCGTCGCGTGCACACCGGCGAGAAACCTTACGCTTGCACGAAGTGCGACATGCGTTTCACCGGTCGGCACAACCTGAAGGTGCACATGAAGGTGCATGGGGAGAACCTAGTCGTCAAGAGGAACCAAGAGGCCGTATAA
- Protein Sequence
- MNWCRACLSSDKEVFQSDDHFACNYNLLTNINVQFSDGKSQCFCQNCIEAVKCFIEFRNKCISAESTLQGYEQTVKSEPKTIKVEIKYEKEDYVPEPYFEDDQHDYTEDYNTIKTEKCADVKEKRPSRQSSKNTIKSAKQKKDESLRGDFVKLSNSNPTCGLCSKEFKDAASLSKHVEGHEVEKGCQLCSAAFKHRAQLFSHRMLHTVNHQNCHLCSVRFRSHANLEFHYRKIHYGEKNVTLECNLCAKKFNTPRRLAKHIWSNHGKNEYICDICSKKYNNKQKLKSHVIGHGDAKPFVCDLCGYCSKYAAGLAAHNVRRHAPAKCICKGCGSAFADAERMARHTCHDTSQICPVCGKSVRRGLIRHMRTHTEERHFKCERCPATYKSRSALKAHSDKHDNNPRQECEFCHVRFYSGSVLVKHRRVHTGQPTASGTHFKCERCPATYKSRSALKEHSDKHDNNPRQECEFCHVRFYSGSVLVKHRRVHTGQPTASGTHFKCERCPATYKSRSALKEHSDKHDNNPRQECEFCHVRFYSGSVLVKHRRVHTGQPTASGTHFKCERCPATYKSRSALKAHSDKHDNNPRQECEFCHVRFYSGSVLVKHRRVHTGQPTASGTHFKCERCPATYKSRSALKAHSDKHDNNPRQECEFCHVRFYSGSVLVKHRRVHTGEKPYACTKCDMRFTGRHNLKVHMKVHGENLVVKRNQEAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -