Ebru064794.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977961.1:18701588-18706297[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 5.7e-05 0.0073 18.7 1.4 1 23 169 191 169 191 0.99 2 11 0.00035 0.044 16.2 0.4 1 23 197 219 197 219 0.95 3 11 0.061 7.7 9.1 2.6 1 23 228 250 228 250 0.97 4 11 4e-06 0.00051 22.3 1.2 1 23 256 278 256 278 0.99 5 11 0.00018 0.023 17.1 0.7 1 23 284 306 284 306 0.97 6 11 1.2e-05 0.0015 20.8 3.1 1 23 312 334 312 334 0.98 7 11 2.2e-05 0.0028 20.0 1.1 1 23 340 363 340 363 0.97 8 11 1.8e-05 0.0023 20.3 2.7 1 23 376 398 376 398 0.98 9 11 1.1e-05 0.0014 20.9 0.3 1 23 404 426 404 426 0.97 10 11 1.7e-05 0.0022 20.3 0.7 1 23 432 454 432 454 0.98 11 11 0.0016 0.21 14.1 0.4 1 23 460 482 460 482 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCGGCTCGGGTGAAGGCGGAGGCGGGCGGACTTGATCTGGAAACAGCACAATGCGCAGCACCTGCGACTGTGCGCGTGAAGCTGGAGCCGGTGTGGGAGGACACGAGTCCGCCCCGGGAGCTGCAGCCGAGGGACCTGGTGTTTATGGAGCACATGTCTGTCAAGGTGGAGGCCGAGTTCGTGGGGGCGGGGCCGGTGAAGGAGGAGCCCGGGAGCGGGAGCGAGACGGCAGACAAGGGCGAGAGAGAGACCGCGCAGGACGCGGACCAAGTTACAGACATATTTGATCCCGCGGCTCTGTCCGTCTCGGGCACTAGTCGCCGCTCACGGTCGCGTCTCGTTGCAGAAGCAGCGCCCGCGTCGcccccgcgccgcgccgcccgcgccggcgccgcccccgcgccgcccccgcgccgcgccgcccgcgccggcgccgccagcGAGGGTCGCAGTGGACACATCAGGAACTCACAACAAATGGGAACAACTGACGAACGATACAAGTGCGCGCTTTGTTACAAAACGTTCGCAAAGTCGCGCACGCTGATGTGGCACGAGAGGACTCACTCGGGGGAGCAACCCTACCCCTGCGGCATGTGCAAGGCAAGGTTCACGCACCCGAACCAGCTGAGGGCTCACGAACTCGGTCACTCGGGGGAGAAACCTGAGAAGCCTCACCGGTGCGGAATGTGTGACAAGCGATTCTGGTGTCCGGCCGATCTGAGGAAACACGAGCGCGTCCACACTGGAGAGAAACCGTACGAGTGCGCGCTTTGTAACAAGAAGTTCGGGCAGAAGGGGACGCTAAAGCTGCACCAGCGGACTCACACGGGAGAGACGCCGTACCCGTGCGGGACCTGCGAGGCGCGGTTCACGCACCTGAGCCAGCTGAGGGCTCACGAGCTCCGGCACACGGGGGAGAAACCATTCCCCTGCAACATGTGTGACAAGAAGTTTACAGTGCTCAACCACCTGAAGACGCACGAGCGGACACACACGGGCGAGCGCCCCTACACCTGCGACTTATGTAACAAGAGTTTCACTCAGTCGAGTGTGTTGTACACCCACGAACGTAACGTGCACAAGAGGCATGTGTTGACGCGCACGGTTGAAAAGAAATTCTCTTGTGAAACATGTAAAAAGGAGTTCAAGCAACTATATCAACTGAACGAGCACACGCGCAGCCACACGGGAGAGAAACCATACGCCTGCGGGACGTGCGACAAAGAGTTCGCTCGGTTAGAGTACTTGAAGAAACACGAACGAATCCACATGGCGCAGAAGCCTTATAGTTGCGGGGTGTGTAAGAAGGAGTTTACAGAGTCAGGCAAGTTGAAGAGGCACGAGCGGGTGCACACGGGGGAGAAACCATATGCGTGTGACGTCTGCCACCAGGTATACGCCGCCTCGGGCACGCTCAAGAAACACAAACTAGTGCATGCGAGGGAAACGAGCCAAGATTGA
- Protein Sequence
- MESARVKAEAGGLDLETAQCAAPATVRVKLEPVWEDTSPPRELQPRDLVFMEHMSVKVEAEFVGAGPVKEEPGSGSETADKGERETAQDADQVTDIFDPAALSVSGTSRRSRSRLVAEAAPASPPRRAARAGAAPAPPPRRAARAGAASEGRSGHIRNSQQMGTTDERYKCALCYKTFAKSRTLMWHERTHSGEQPYPCGMCKARFTHPNQLRAHELGHSGEKPEKPHRCGMCDKRFWCPADLRKHERVHTGEKPYECALCNKKFGQKGTLKLHQRTHTGETPYPCGTCEARFTHLSQLRAHELRHTGEKPFPCNMCDKKFTVLNHLKTHERTHTGERPYTCDLCNKSFTQSSVLYTHERNVHKRHVLTRTVEKKFSCETCKKEFKQLYQLNEHTRSHTGEKPYACGTCDKEFARLEYLKKHERIHMAQKPYSCGVCKKEFTESGKLKRHERVHTGEKPYACDVCHQVYAASGTLKKHKLVHARETSQD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -