Ebru059769.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977958.1:16603943-16612902[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.2e-07 0.0001 24.5 1.4 1 23 247 269 247 269 0.99 2 11 0.0037 0.47 13.0 2.9 1 23 308 330 308 330 0.98 3 11 0.00021 0.027 16.9 5.3 1 23 356 378 356 378 0.98 4 11 1e-06 0.00013 24.2 1.0 1 23 384 406 384 406 0.98 5 11 1.2e-05 0.0015 20.8 0.7 1 23 412 434 412 434 0.99 6 11 2.8e-05 0.0036 19.6 4.6 1 23 440 462 440 462 0.99 7 11 0.015 1.9 11.1 0.6 1 14 468 481 468 488 0.88 8 11 2.5e-07 3.2e-05 26.1 0.9 1 23 493 515 493 515 0.99 9 11 2.6e-05 0.0033 19.8 2.4 2 23 520 541 519 541 0.97 10 11 2.8e-06 0.00036 22.8 4.7 1 23 547 569 547 569 0.99 11 11 0.00034 0.044 16.2 0.7 1 20 575 594 575 594 0.96
Sequence Information
- Coding Sequence
- ATGGACGTGATGCACTCTTGCTGCTGCTGCCTGCGGTGTTCTCCGGACAGGGACCTGACGACGCCGTACACACATCTCGGCACCACGGAGATTTACTCGGACATGCTCAAAGATTGCTTTGatttaaatCTGGGAGGGGGTGGCGATGGCTCGTGCGGGATCTGCTCTGCGTGCGTGGGCCGCCTGCAAGACGCGCGCGACTTCAAGCTGCAAGTGCAGCGCAGCCAGGCGGAGCTGCAGGCGCGGCTGCAGGGAGCCCTGCGGGTCAAAGAGGAAGAGCCCGCAGTGGAACCAGAGATGGAGGATGGAGACGGGAGCTGTGAGGAGCCTGTATTGGATGAAGAGCCCCCAGTCAAGCCGGAGATGCAGGATGAAGATGGGACAGGAGAAGACACGCtgcaTGAAAAGCCCGCAGTGTGGCCGGAGATGGAAGATGGAGACGGGAGCAGTGAGGAGCTTGTGTCAGATGAAGAGGCTCCATTGAAGCTGGAGGTGCTGGATGAAGATGGGACAGGAGACGAGATGTCGCTCTGCCTGGCCGGCGGTGCTGGGCGGCCCGTGTCCGCCCTTGTGAGGGAGCAGCTCGCCATGACTTGCTCCGTGAGGCTGGAGCGCCTCCGAGGCGATGAGGCGCCGCACGCGAGCCGCACGAGTCTCGCGACATTACACGAGTCGCGGCGAGCGAGTCGTGTGAAGGAACCCCACGATAACACCGCCGGGCTCCGCGCCGAGGAAGCGTACACATGCGATACTTGCGGGAAACACTTCACAGGGAAGTCGAGTTTAATCGCGCACGTGCGGAGTCACCTCGTTCAGGACCACTCCGCAGCGACGTATTCTCGTGGAACATGTTCAGAACAGTTCTCCGGTGAAAATCTCTTCCCTAAACAAACACATGCCCTCACAACAGATGAGAAAACCTACTGCTGTGACATGTGTAATAAGCAATTCAaggcaaaaactattttaatcagACACATACAGACACATATGGACCTGACACGTGATTCGAGCAGTTATAAAACTATTAAGAAAACCTCAGATTTAATGCTTTACAAACAGATTCACACATGCAAAACGTGTAAAAAGCAATTTGTAAACAAAAGTCGATTAGAAACACACagaagaattcacaccggagaaAAACCTTACAGCTGTGAAGAATGTAAAAAGGAATTTACGCGAAAAGATAATTTAGATGCACATAAACGAATCCactccggaataaaaccatacaggtgtgaagaatgtgacaaacaatttacagaGAAACGTAGTTTAGATGAacatctaagaattcacaccggaataaaaccatacaggtgtgaagaatgttacaaacaatttacacggaAACATAGTTTAGTTTACCATCAAAGAGTTCACGCCGGAATAAAACCGTACAGCTGTGGAGAATGTGATAAACAATTTACACGAAAAGATGAacatctaagaattcacaccggaataaaaccatacaggtgtggaGAATGTGAAAAGCAATTTACACGAAAAGATTATTTAGTCAGACATATAAGAGTTCACacaagagaaaaaacgtgtgaagaatgtgacaaacaatttacacagaAACATAGTTTAGATGAACATctgagaattcacaccggaataaaaccatacaggtgtgaaaaatgtgacaaacaatttacacggaAACATAGTTTAGATAAacatctaagaattcacaccggaataaagccatacaggtgtgaagaatgtgacaaacaatttgCACAGAAACATAGTTTAGATGAACATCTATGA
- Protein Sequence
- MDVMHSCCCCLRCSPDRDLTTPYTHLGTTEIYSDMLKDCFDLNLGGGGDGSCGICSACVGRLQDARDFKLQVQRSQAELQARLQGALRVKEEEPAVEPEMEDGDGSCEEPVLDEEPPVKPEMQDEDGTGEDTLHEKPAVWPEMEDGDGSSEELVSDEEAPLKLEVLDEDGTGDEMSLCLAGGAGRPVSALVREQLAMTCSVRLERLRGDEAPHASRTSLATLHESRRASRVKEPHDNTAGLRAEEAYTCDTCGKHFTGKSSLIAHVRSHLVQDHSAATYSRGTCSEQFSGENLFPKQTHALTTDEKTYCCDMCNKQFKAKTILIRHIQTHMDLTRDSSSYKTIKKTSDLMLYKQIHTCKTCKKQFVNKSRLETHRRIHTGEKPYSCEECKKEFTRKDNLDAHKRIHSGIKPYRCEECDKQFTEKRSLDEHLRIHTGIKPYRCEECYKQFTRKHSLVYHQRVHAGIKPYSCGECDKQFTRKDEHLRIHTGIKPYRCGECEKQFTRKDYLVRHIRVHTREKTCEECDKQFTQKHSLDEHLRIHTGIKPYRCEKCDKQFTRKHSLDKHLRIHTGIKPYRCEECDKQFAQKHSLDEHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657686; iTF_00657496; iTF_00657484;
- 90% Identity
- -
- 80% Identity
- -