Ebru058656.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977958.1:4779111-4800581[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 4.5 5.7e+02 3.3 0.5 2 23 294 315 293 315 0.93 2 24 0.0029 0.37 13.3 3.1 1 23 337 359 337 359 0.96 3 24 0.00032 0.041 16.3 0.7 1 23 363 386 363 386 0.98 4 24 0.037 4.7 9.8 0.6 2 22 392 412 391 412 0.95 5 24 0.0045 0.57 12.7 0.5 1 23 419 442 419 442 0.97 6 24 4.7 5.9e+02 3.2 0.2 3 23 486 507 485 507 0.93 7 24 0.01 1.3 11.6 0.5 2 23 533 555 532 555 0.95 8 24 0.0083 1.1 11.9 0.6 2 23 608 630 607 630 0.94 9 24 0.31 39 6.9 0.6 2 23 655 677 654 677 0.91 10 24 0.25 32 7.2 0.3 1 23 699 721 699 721 0.96 11 24 0.026 3.3 10.3 0.3 3 23 727 748 726 748 0.92 12 24 0.013 1.7 11.3 0.5 1 22 753 774 753 774 0.97 13 24 0.77 98 5.7 0.3 1 20 781 800 781 804 0.84 14 24 0.033 4.1 10.0 1.2 1 19 811 829 811 834 0.83 15 24 0.0015 0.2 14.2 6.4 1 23 838 860 838 860 0.96 16 24 6.1e-05 0.0078 18.6 1.3 2 23 867 888 866 888 0.96 17 24 0.25 31 7.2 0.8 2 23 936 958 935 958 0.92 18 24 0.47 59 6.4 0.3 2 23 1030 1051 1029 1051 0.91 19 24 3.8e-05 0.0048 19.2 0.1 2 23 1056 1078 1055 1078 0.93 20 24 7.2 9.1e+02 2.6 0.7 3 20 1085 1102 1084 1104 0.89 21 24 0.0054 0.69 12.5 0.1 1 23 1141 1164 1141 1164 0.97 22 24 0.00062 0.079 15.4 1.3 1 23 1169 1191 1169 1191 0.95 23 24 9.6e-05 0.012 18.0 1.4 1 20 1197 1216 1197 1219 0.94 24 24 0.0002 0.025 17.0 1.5 1 23 1225 1248 1225 1248 0.97
Sequence Information
- Coding Sequence
- ATGGAAGGCAAAAGTTCTGATTGGATACGGGGGCCTAGCGGCCCGACCGTCTGCCGTTGTTGTTTTGCTGAAGGCTGTTATAAAGACATTTCGACTGAATATTTTTGGATGGGGAAGAGAGAAGTGTACGCCGAGATGCTGACGGAGACGTTTGATCTCAGTATTGCATTTGCTCAAGCATCGGGCACAAACAGCAACAGCCGTCTCATCTGCGAGCCCTGCATATCCCGGCTGCGGGATGCCTCGGAGTTCAAGAGGCAGGTCCAGGAGTGCGAGAAGATGTTTATGCAGTATCTGGACCCCGGGCGGATTGTTGGCCTGGAGATTGAGTTGGAGGAACCGGGGAAGGAAGTGAAGCTAGAGCGAGTCAAGCTGGAGAAGAACCCGAGTGACAACGAGTTGGACGACCGGAGCGGCTTCGACGACATGGACGAGGACGAACTCGACGACCAGCCGCTAACAAAACTCGCCAGCAAAGTGCCTAAAAAGGAGTCGGTAGACCTCCTCGACCTCCTGGACAATGCCAAGGCGGAAAAGAGGAAGTCCACCTCCAAAGCCAAAGCTAGCCCGGCCAAAAAGGCCAAGACCAAGAAGGAATCCCCTAAAGCGACCGCCAGCAAAGTGAAACcggagaagaagaagaaagACAAGAGTAACGATCCGGCGCGAACTAACGCCGAGACGATCCTAACATGCGCCACGGCCTACCCGTTCCGCGTCGCCGACAAAAGCATACTGTGCGTATACTGTCTCGACACCTACGACGACCCTATCCTCTTCCGCAAACACATGGAGGATGAGCACAGAGACTTCACGCTCAAGGTCGCCTTCCACAACCTACCCAGCCTAGAGTTCATCAAAGCAGACATCACCGATCTCAGATGCAGATTCTGCTCTCAAAAATTCCAATCCCTAGAGGCTGTAGCCGAACATTTGACGCAACACGGAAGGAAGATAGACGCGAACGGGAAACTGGGCGTCATGCCGTATTTACTACACAAAGACGTTCACAATTGCGCTGTATGCGAAAAGAACTTCCCGACGCTGTTCCATCTGAATAGACACACGATCTCACACTTCCTCAGCTACGTGTGCCACGTGTGCGGGAAAAGTTACGTGGCCACGACCGGCCTGCTCCGCCACGTCAGGTCCAAGCATCAGCAGTACGAAGTAACCTGCAAGAAGTGCAGGAAAGTTTTTCCAAACATGGAAGCCAAGGAGAAACACACGAGGACAGAGAAATCTTGCATGCCGTACGTCTGTCCGAAGTGTAACGAGAGATTCCTCGATTGGAAATCCAGGAAGAGACACTTGGAGACCGCTCATGGACAGACGAAACGGAGCTTTAGATGTGCTGATTTGGACACACAAATCGATCCCGTGAGGAGAAACGCCGAGGCGATTATTACGTACACGAGCGCTTATCCGTTCCGAGTGAACGACAAGTCTATACTTTGCGTGTACTGCGGGGACTTGTACGACGACCCCGCCCAGTTCCGTCTTCACATGGACCATGAACATGCGAAATTTAACTACCGCATGCCCTTCGAAAAACTACCCAAATCAGAATACGTTAAAGTCGACATTTCTAATCTTAGGTGCAGAATTTGTACAACGGCTTTTTCTAATTTAGAACAAGTTTTTACACACATAAAAGAGAATCATTTCAAGAATGTACACGCAAATTCTCCCCTTGGCGTGATGCCGTTCCTTTTAGATTGCAACTATCTTGGATGGAGTCGGGATGCCGCCAAGCAGAACGCCCAAATGATATTGAGAAACTCGACGGCGTATCCGTTCCTGCAAATATCTTCCTCGTTGCGGTGCTGTTTTTGCCGCGAGACTTTCGACGATCCCGCTCTGTTCAGGGCACACATGGATATCGTCCATCAGAACGTCGATAGGTCCACATGCCACAGAGCAAACCTGGATACACAAACACGAGTTGATATAACTAACCTCCGCTGTAAAAGATGTATAAAGTCGTTTGCTTCTATTGAAGCTCTCGCGAAACATTTACACGATGAACACGAACTAGAAATCGAATTGAGCCAAAGCTTGGCTCTTGTGCCAATAAGATTAGAGAAGAACCGTTACGAGTGCGTGGTTTGTGCTCAAAAATTTACCAGCACGATGCAAGTTTCCAGGCATACGGGaatgcactattttaggaataTATGCGATATTTGTGGGAAACGGTTTGAGAGTCGCAGGGGCATCGACAACCATGTTAAATTACGCCATTCAACCCGGACATTTTACTGTCGAGGTTGCAAAAAATCCTATCCAAGTTTAGAAGCTAAAAAGGAGCACATGCGCACTAGTAAATCTTGTCTGCCATTTAGATGTACATTATGTAAAGAACGCTTCCCTTTTTGGGAACGAAGGGAGGACCATTTAGTCGAAGTCCATGGTAAAGAAAGGAAAATATTTCGTTGTACAGAATGTGAGAAAGTGTTTGAACGGCGCACGCTACTGTACTTCCATTTTAAGGCGGCACATACGGAGGATCACAAATGTCAGTACTGCGACATGACGTTCTCTACTAGACGGGATTTGCGGGAGCACACACACCAGCACACAGGAGAGCGCCCACTTAAATGCCACGTTTGTAATAAATCCTTTGCTCGAGACAAAGCTTTAAAGCAACATCTGATCATTCACGATGACAGCAAAAAGAAAGTGTGCTCGGTGTGCAGTAGACTCTTTACTGACCAAGATGAACAAGCCGCAGCGAGACAGAACGGCCAGGTAGTCGTCACATACACTACAGCGTATCCATTCAAGCTCCCAGAAAACGACATGGTTTGCGTGTACTGTTGTGAGACGTATCAGGACCCATCCCAGTATAGGAAGCACATGGAAGATGAACATAAAACTTTCAAAGTGAACATCGCATTCCTACATTGCTATGAAGGCTATATAAAAGTCGACATAACTGACTTGACATGTCGTATATGTGAAGAATTCTTACCTGACTTAAAAACGGCCGCAAATCATTTGAAAAATATCCATAACAACCCTAATATAGACTTGAACTTTGAAGTAGGTTTACAGCCATTTAAACTCATCGATAACATCAATTGGACGTGCGCTGTTTGTGAAATTAAAGCTTTTTCTCTACGTCAACTGAGCAGACATACGCAAACACACTTTTCAAAATTAACTTGTGATATCTGCGACAAAGGTTACCCTACGCCGTCTTCTCTTCGACAGCACATACAATTCGTACATTTCGGCCGTCAGCGGATATGCCGAAAATGCAGACAGACTTTTGATACAGCGGAAGAAAAACATGACCACTTGACTCAATATAAAACGTGTCGTCAGTACTGTTGCATGGTCTGCGGGGACCGCTTTATACtgttgaaagaaaaaatcgccCACATGACGGAAAAGCATGGTGCTCCGGAGCAAACATTCCCCTGTCCTCAATGCAACGAAGTGTTCATGGGCAAAAACAAACTAGCTGACCACTTTAGAGTAGCGCACGCTCAAGCCAAACACATATGCAATTATTGTGGGAGAGactataaatacaaaaatagtcTAGATCGCCACATAGTTGTACACACCCAAGAGAAGGCATACGTGTGCGGAAATTGTTCAAAGACATTCCACAGGAAATCTAACTTAGTACAGCATATGTGGATACACAGTGAATATAAACGATTTGAGTGTGTAACTTGCGATAAGAAGTTTAATCAAAGAGTAAGCTGGAGAACACATATGCAGTCATATCACCCTGACCAAAATTATTAA
- Protein Sequence
- MEGKSSDWIRGPSGPTVCRCCFAEGCYKDISTEYFWMGKREVYAEMLTETFDLSIAFAQASGTNSNSRLICEPCISRLRDASEFKRQVQECEKMFMQYLDPGRIVGLEIELEEPGKEVKLERVKLEKNPSDNELDDRSGFDDMDEDELDDQPLTKLASKVPKKESVDLLDLLDNAKAEKRKSTSKAKASPAKKAKTKKESPKATASKVKPEKKKKDKSNDPARTNAETILTCATAYPFRVADKSILCVYCLDTYDDPILFRKHMEDEHRDFTLKVAFHNLPSLEFIKADITDLRCRFCSQKFQSLEAVAEHLTQHGRKIDANGKLGVMPYLLHKDVHNCAVCEKNFPTLFHLNRHTISHFLSYVCHVCGKSYVATTGLLRHVRSKHQQYEVTCKKCRKVFPNMEAKEKHTRTEKSCMPYVCPKCNERFLDWKSRKRHLETAHGQTKRSFRCADLDTQIDPVRRNAEAIITYTSAYPFRVNDKSILCVYCGDLYDDPAQFRLHMDHEHAKFNYRMPFEKLPKSEYVKVDISNLRCRICTTAFSNLEQVFTHIKENHFKNVHANSPLGVMPFLLDCNYLGWSRDAAKQNAQMILRNSTAYPFLQISSSLRCCFCRETFDDPALFRAHMDIVHQNVDRSTCHRANLDTQTRVDITNLRCKRCIKSFASIEALAKHLHDEHELEIELSQSLALVPIRLEKNRYECVVCAQKFTSTMQVSRHTGMHYFRNICDICGKRFESRRGIDNHVKLRHSTRTFYCRGCKKSYPSLEAKKEHMRTSKSCLPFRCTLCKERFPFWERREDHLVEVHGKERKIFRCTECEKVFERRTLLYFHFKAAHTEDHKCQYCDMTFSTRRDLREHTHQHTGERPLKCHVCNKSFARDKALKQHLIIHDDSKKKVCSVCSRLFTDQDEQAAARQNGQVVVTYTTAYPFKLPENDMVCVYCCETYQDPSQYRKHMEDEHKTFKVNIAFLHCYEGYIKVDITDLTCRICEEFLPDLKTAANHLKNIHNNPNIDLNFEVGLQPFKLIDNINWTCAVCEIKAFSLRQLSRHTQTHFSKLTCDICDKGYPTPSSLRQHIQFVHFGRQRICRKCRQTFDTAEEKHDHLTQYKTCRQYCCMVCGDRFILLKEKIAHMTEKHGAPEQTFPCPQCNEVFMGKNKLADHFRVAHAQAKHICNYCGRDYKYKNSLDRHIVVHTQEKAYVCGNCSKTFHRKSNLVQHMWIHSEYKRFECVTCDKKFNQRVSWRTHMQSYHPDQNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -