Ebru066122.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977962.1:17579883-17590513[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00018 0.023 17.1 1.6 1 21 172 192 172 194 0.95 2 12 0.0015 0.2 14.2 0.4 1 23 244 266 244 266 0.98 3 12 7.5e-06 0.00095 21.4 1.4 1 23 272 294 272 294 0.96 4 12 1.3e-05 0.0016 20.7 4.2 1 23 300 322 300 322 0.98 5 12 8.6e-05 0.011 18.1 3.0 1 23 328 350 328 350 0.98 6 12 0.0016 0.21 14.1 1.4 3 23 358 378 356 378 0.97 7 12 0.002 0.25 13.8 4.0 1 23 384 406 384 406 0.98 8 12 0.00012 0.016 17.6 5.0 1 23 412 434 412 434 0.98 9 12 7.5e-05 0.0095 18.3 0.6 3 23 443 463 441 463 0.97 10 12 7.4e-06 0.00094 21.5 0.3 1 23 469 491 469 491 0.98 11 12 1.2e-06 0.00016 23.9 1.6 1 23 497 519 497 519 0.99 12 12 0.00044 0.056 15.9 3.6 1 23 525 548 525 548 0.97
Sequence Information
- Coding Sequence
- ATGGCGCCGGGAGTGCACGTAAAGGTGGAGCCCGGGGCTGCGGCCACGGACCAAGCCGCAGCCATAAAACAAGAACGCAGGCAGCTGAGCGAGTGCGTCGTGCGGCTCGAGCGCCTCGTCACGTGTCCGCCGGGGACCAGAGACAGGGACACGGACAGGGACATGGACAGGGACATGGACAAGGACACGGACAGGGACGCTCAGCGAGGGCAGCGGACAGCGGACCGCGGGTCCGATCTCGCTACTTGCGGCACAAACGAACATGGCGTGGAACAGGACACTTGCGATATTGCTGAAAATGAATCAAACCGGACTCGGTCGGGTGCGGGCGGCAGCCGGCAGGAGCCGGCCTCGCGCGCGCGCACGCGGCGGGAGTGCTGCGTGCGGCTCGAGCGCGTCCCCGGCctcgcgccgccggccgcgagCCGCGAGCCGCGAGCCACGAGCCGCGAGCTGCGAGCCACGCCACACAATACTAACACCCTTCAGGGCAACGCAGAGATTCCAACCTGCTATGTGTGCAACACTTGCGGAAGAATATATCGGCAAAAATATCAATTGATACTGCATATTCTATGCCACGGTAATCAGCCTCCAATATCGAATAAATCAAACTCATGCGGCCTTATCCGTGATAAAAAGGGAAAGGAACCGCCCTCCCACGATACACGTGGACACAATTATGGGGTGAAAGTTTTGAGTAATTTAGACGGACGAAAGGGAAAATCATATTCGTGCAAAATGTGCAATGATAAGTTTCCTGAGTTAGAACAACTTAAGATACATATCCGCCTTCATACAGGCGGAATTATATATTTATGCGACGTTTGTGATAAGAAATTTGTGCACGCAGGAAACTTCGAGAGGCACAAGCGAGTCCACACACGGGAGAGACCTTTCTCGTGCCACATTTGTAAAAAACGTTTCATTGAAAAAGGCCATTTGAACACACACATGCTGATACACACGGGAGACAGACCATTCTCCTGCGATATATGTAAGAAACAGTTTGTGCAAATAGCTCATttaaacacacacaaaaaaacgCACACCGGGGAGAAACCATTTGGATGCGTAGTCTGTGGGAAGCGGTTCGCGGACTCCAGCAAGTGTCGGGTACATGTACGAACACACACTGGAGACAAACCATATTCTTGCGACGTATGCAATAAGCAGTTTTCACAAAGAGACAACTGCCTCAAGCACGAACGGAACCACACCGACGAAAAGTCGTACTGCTGCGAAACTTGTAACAAAACATTTTCAAACGTCAATTATCTATACAGACATCGACGGATCCATAATACCGACAACAAACCGTACTGGTGCAAAATATGCAACAAGGAGTTTTCACAATACGGCTCCTACAAGAGGCACGCGCAAGTGCACTCCGCCGACAAACCATACTCTTGCGAAATCTGCGGGAAGCGGTTCGCGGACCAGAGCACTCTCCCTAATCACAGGCGGCTGCACGCCGGCCAGAAACCATACTCGTGTGAAATCTGCAATAAGAAGTTCCCGCTGGCGAGTTACTTAAGGAAGCACCGCCGAACCCACACGGGGGAGAAACCTTACACATGTGATATATGCAACAAACGGTTTTCAGAATCAGGAAATTGTAAGAAACATATTAAACAAATGCATAAAAGCAAATGA
- Protein Sequence
- MAPGVHVKVEPGAAATDQAAAIKQERRQLSECVVRLERLVTCPPGTRDRDTDRDMDRDMDKDTDRDAQRGQRTADRGSDLATCGTNEHGVEQDTCDIAENESNRTRSGAGGSRQEPASRARTRRECCVRLERVPGLAPPAASREPRATSRELRATPHNTNTLQGNAEIPTCYVCNTCGRIYRQKYQLILHILCHGNQPPISNKSNSCGLIRDKKGKEPPSHDTRGHNYGVKVLSNLDGRKGKSYSCKMCNDKFPELEQLKIHIRLHTGGIIYLCDVCDKKFVHAGNFERHKRVHTRERPFSCHICKKRFIEKGHLNTHMLIHTGDRPFSCDICKKQFVQIAHLNTHKKTHTGEKPFGCVVCGKRFADSSKCRVHVRTHTGDKPYSCDVCNKQFSQRDNCLKHERNHTDEKSYCCETCNKTFSNVNYLYRHRRIHNTDNKPYWCKICNKEFSQYGSYKRHAQVHSADKPYSCEICGKRFADQSTLPNHRRLHAGQKPYSCEICNKKFPLASYLRKHRRTHTGEKPYTCDICNKRFSESGNCKKHIKQMHKSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -