Ebru063099.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia brunnichana
Gene Symbol
-
Assembly
GCA_963854355.1
Location
OY977961.1:356596-381800[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 4.4e-06 0.00056 22.2 0.7 1 23 152 174 152 174 0.99
2 12 0.093 12 8.6 2.8 1 23 187 210 187 210 0.96
3 12 0.00041 0.052 16.0 6.7 1 23 614 636 614 636 0.98
4 12 3.3e-05 0.0042 19.4 0.3 1 23 642 664 642 664 0.99
5 12 0.00012 0.015 17.7 0.1 1 23 670 692 670 692 0.98
6 12 7.3e-05 0.0093 18.3 3.1 1 23 698 720 698 720 0.96
7 12 5.2e-06 0.00066 22.0 0.5 1 23 726 749 726 749 0.97
8 12 0.00042 0.054 15.9 0.7 1 23 754 776 754 776 0.97
9 12 2.2e-06 0.00029 23.1 2.8 1 23 782 804 782 804 0.99
10 12 2.8e-05 0.0036 19.6 0.3 1 23 810 832 810 832 0.97
11 12 0.00033 0.042 16.3 1.9 1 23 838 860 838 860 0.98
12 12 0.00013 0.016 17.6 2.2 1 23 866 888 866 888 0.98

Sequence Information

Coding Sequence
ATGTCACTAGTAACATTGTGTGTGAAGACTGAGGCAGAGGAGGTGTGTGTGAAACAGGACACTGATATATGTGACGATGAGGCCGGGGCACATTTAAAGATGGAGGTGGAGTGTGAGGACCGATCAGCCTTGTGCGAGCTGTATGCGGGCCACCAGGTCAAGGACGAGCTTGTGCTGGGCCCCGTGGACTTTCACCGGCGTAGTGTCCTCTCCTCAATTCCAGaCCAAGCTCGACTAGCTTACAAAAATGAACCATCGAAAACAAACAAACGCCAAACGCGAGTTCAAGAGAtgaaagaaagtagagaaaaccGTAGTCCAGTAGACAAACTTAACGAACCATCTTCATCCCTTCAAGTGGAGTCACCAATGAACACGGACATACAAGAGGTTCCTCCTGAAGAACCCGCCGTCAATACATCCACTGGCAAAACGGACTCGAATGCTACTAAGTTCAAGTGCGATCTGTGTGGCAAGAGTTTCGGTATGAAGTTGGACTTACAGAAACACATACAAACACACGAGCTGATGAGTAAGAGTCTAAAAGCGAGCAAGGATTTCACGTGCAAGAAATGCAGTTGTATATTTGAGACTAAACTGCTTCTAGTGGAGCATGCGAAGAGCCGGCATGCCGAGGGGAGCATACTTGGACCAACCTTGTTCACCCTGTTTATTAACGACATCTTGGAAATTGCCATTCCTAAAGTAAAACTTGTATGTTACGCCGATGATACTGTGTTGATCGTAAATGGGAAGTCGTGGGAAGAAACATACTGCCATGCAGAGAGAGCGCTAGCTGATGTGGCTGTCTGGTTGAACAGTAATCTTCTCACGTTAAATCTAGACAAGACAAACTTTATAGCTTTCTCGAAAACTATAGCCGCGTCCCCTTCAGTGAACAAAACCATTAAGTTCCATACCTGTTCCTATAACACCTCAGCAATGCTCTCCTGTCCCACCAATACATGCACCTGTCAGGATATTAAGAGGCAAAAAATCGTAAAATATCTAGGGATTAGTTTCGACCAGCATCTCACCTTCAAGCAGCACATTTCTAATCACGCAACGAGAGCTAAAAAGCTAATCTATGTAATGAAGAGACTACGTGATTGCGCTGCCCCTGACGTGCTTCGTCTGGTATACCATGCATTGTGTCAGTCCATCCTGCAGTACGGAGTGGCCGTTTGGGGCGGCGCGGCTAAGAGCCACATGCTAGAGTTAGAACGTGCACAAAGAGCGGTTACAAAgTGTAACCGATACATGATCGGACAACTGTATAATTTGTGGCTGTGGTGGTTTCCCTCTCTGATAATTGTCGGAGCTGCAGTAAGTTGTGTTGGGTCAGCGCGGGCTGACAACAGGATGGCGGCGCTGCCGGGGTGCGGGGTGTGCGTGAAGGTGGAGCCCGCAGAGGACGAGGAGCAGGAGCTCCGCTACGAGGCAGGACATTGTATGGAGGCCGGAGTCGCGCGCATGGAGGGGGTCATGGAAGTCAAGGAGGAGGCTGTAGAGGTGAAGGAGGTGACGGTAGTGGTGAAGCAGGAAAGCGTGGAGGAGGATGACATGGGGCCGAGTGAGGCCGGGGAACTTGAGTCGGGGACCATGCTGCTTACCAAGGAAATGTGCGTGACTGTGGCGGTGGAGTTCGAGCCGGCGCGCGAGGCGGGGGCGGGGGTGGGGGCGGGGGTgggggcgggggcgggggcggggCTCCCGCCGGCACCGGCCGGCCCGCGGGGGGGAGAGGGCGGAGTGTGGCCGGCCCCGGTCGGCCTCAATGAGCCGGCCCCGGTCGGCCTCGCGGCCCCGGTCGGCCCCACGGCGCCGGCCGACCGGCCGCATCGCTGCGATACCTGCAACAAACACTTCAAGCAACTCAACGACCTGAAGCGACACAGCCGCGTGCATACAGGAGAGAAGCCATACGTGTGCGCCGTCTGCGACAAGCGGTTCGCCGTGTCCATGTCGCTGCGGCtgcacacgcgcacgcacacagggGAGAAACCGTACCCGTGCGACATGTGCGTGAAGCGGTTCGCGCAACTCGGACAGTTGAAGGCGCACGAGCGTTGGCATAGAGGGGAGAAACCTTACTTGTGCACAGTCTGTAATAAACGATTCATGCAGCCGGAACATTTGAAGTCCCACTCGCGGACGCACACGGGAGAGAAACCCTTCGTTTGTGATGTATGTGACCGGCGATTTTCACAATCCAGCGCGTTGAATTTGCATAAACGTAACGTTCACGAGAGAGAGTCGTATCCCTGCGGAATATGTAATAAGAATTTCTTCAAACTGGACGCCTTGAAGAACCACGAGCGGTTTCACGTCGACGGGAAACGGTTTACTTGCGAGATCTGTCAGAAAGCGTTCAGCCAGTCCGGTAACTACCACAAGCACGTGCGAACACACTCGGGAGAGAGGCCCTTCCCCTGTGGAGCTTGCGACAAGGGGTTCAAGACGTTGGCGACGTTGAAGCGGCACGAGAGGACGCACACGGGCGAGAAGCCCTACGCTTGTGAAGTGTGCAACAAGGCGTTCGGGCAGCTGTGCTCGTTCCGGAGACACGAGCGCATGCACCGCGGTGAAAAACCATACTCATGCGACGTGTGCCTCAAGCAGTACACGGAGTCCGGACACTTGAGGAAACATCAGCGAATACACAAGGAAGAAAGAAGCTGA
Protein Sequence
MSLVTLCVKTEAEEVCVKQDTDICDDEAGAHLKMEVECEDRSALCELYAGHQVKDELVLGPVDFHRRSVLSSIPDQARLAYKNEPSKTNKRQTRVQEMKESRENRSPVDKLNEPSSSLQVESPMNTDIQEVPPEEPAVNTSTGKTDSNATKFKCDLCGKSFGMKLDLQKHIQTHELMSKSLKASKDFTCKKCSCIFETKLLLVEHAKSRHAEGSILGPTLFTLFINDILEIAIPKVKLVCYADDTVLIVNGKSWEETYCHAERALADVAVWLNSNLLTLNLDKTNFIAFSKTIAASPSVNKTIKFHTCSYNTSAMLSCPTNTCTCQDIKRQKIVKYLGISFDQHLTFKQHISNHATRAKKLIYVMKRLRDCAAPDVLRLVYHALCQSILQYGVAVWGGAAKSHMLELERAQRAVTKCNRYMIGQLYNLWLWWFPSLIIVGAAVSCVGSARADNRMAALPGCGVCVKVEPAEDEEQELRYEAGHCMEAGVARMEGVMEVKEEAVEVKEVTVVVKQESVEEDDMGPSEAGELESGTMLLTKEMCVTVAVEFEPAREAGAGVGAGVGAGAGAGLPPAPAGPRGGEGGVWPAPVGLNEPAPVGLAAPVGPTAPADRPHRCDTCNKHFKQLNDLKRHSRVHTGEKPYVCAVCDKRFAVSMSLRLHTRTHTGEKPYPCDMCVKRFAQLGQLKAHERWHRGEKPYLCTVCNKRFMQPEHLKSHSRTHTGEKPFVCDVCDRRFSQSSALNLHKRNVHERESYPCGICNKNFFKLDALKNHERFHVDGKRFTCEICQKAFSQSGNYHKHVRTHSGERPFPCGACDKGFKTLATLKRHERTHTGEKPYACEVCNKAFGQLCSFRRHERMHRGEKPYSCDVCLKQYTESGHLRKHQRIHKEERS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-