Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977958.1:12559378-12566968[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 6.9e-06 0.00088 21.6 2.7 1 23 184 206 184 206 0.97

2 13 5.7e-06 0.00072 21.8 3.6 1 23 212 234 212 234 0.99

3 13 0.00015 0.02 17.3 6.0 1 23 240 262 240 262 0.99

4 13 0.00092 0.12 14.9 0.7 1 22 268 289 268 289 0.95

5 13 0.0046 0.58 12.7 1.9 1 23 297 319 297 319 0.95

6 13 0.0024 0.31 13.6 0.6 3 23 327 347 326 347 0.97

7 13 0.00053 0.067 15.6 2.8 2 23 354 375 353 375 0.96

8 13 5.6e-07 7.1e-05 25.0 2.5 1 23 381 403 381 403 0.99

9 13 0.00025 0.032 16.6 1.8 1 23 409 431 409 431 0.98

10 13 0.00019 0.024 17.0 4.8 1 23 438 460 438 460 0.98

11 13 3.7e-06 0.00047 22.4 2.0 1 23 466 488 466 488 0.98

12 13 1.1e-05 0.0014 20.9 4.4 1 23 494 516 494 516 0.98

13 13 0.00012 0.016 17.6 0.2 1 22 522 543 522 546 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	6.9e-06	0.00088	21.6	2.7	1	23	184	206	184	206	0.97
2	13	5.7e-06	0.00072	21.8	3.6	1	23	212	234	212	234	0.99
3	13	0.00015	0.02	17.3	6.0	1	23	240	262	240	262	0.99
4	13	0.00092	0.12	14.9	0.7	1	22	268	289	268	289	0.95
5	13	0.0046	0.58	12.7	1.9	1	23	297	319	297	319	0.95
6	13	0.0024	0.31	13.6	0.6	3	23	327	347	326	347	0.97
7	13	0.00053	0.067	15.6	2.8	2	23	354	375	353	375	0.96
8	13	5.6e-07	7.1e-05	25.0	2.5	1	23	381	403	381	403	0.99
9	13	0.00025	0.032	16.6	1.8	1	23	409	431	409	431	0.98
10	13	0.00019	0.024	17.0	4.8	1	23	438	460	438	460	0.98
11	13	3.7e-06	0.00047	22.4	2.0	1	23	466	488	466	488	0.98
12	13	1.1e-05	0.0014	20.9	4.4	1	23	494	516	494	516	0.98
13	13	0.00012	0.016	17.6	0.2	1	22	522	543	522	546	0.91

Sequence Information

Coding Sequence: ATGGACGTGGTGCACTCGTGCCGCTGCTGCCTGCTGCGCGCTCCGGACAAGGATCTGACGACGCCGTACACACATCTCGGGAACACGGAGATATACTCGGACATGCTTAAAGAGTGCTTCGAGATACATCTGATACCGGGTGGCACTAATGAGTGCGGGATCTGTGATGTGTGCGTGGGCCGGCTGCGAGACGCGAGCAACTTCAAGCTGCAAGTGCAGCGCTGCCAGGTGGAGTTGCAGGCGCGGCTGAAAGAAACTCTCATTATTAAAGATGAAGAGCCCGTAGAGGTGTCAGAAGTGGTTCTCGAAAATGACACTGGTGACAGGGTGTCACAGGAAGATCCCTTGCTGAAACTCGAGACAGATTTAGATGTAACGAGTGATGAGGACTTGTCGTCAGGAccagCGGGGCGGCAGGCGGGGCCGTCCCGCGCCCGGGAACAGCTCGCGGCGGCTATTGTCGTGCCCGCGACGCCCGATGACTCCTTTGACGTCTACTCCGTTGAATCCTCGACCGATACTTACGAACAAGAAGACAAGCCGAAAAGTCACCAGTGTAAAGTGTGTGATAAGACATTTGTGAATAACTCTGTTTTAAAGCGACATAGACTACTTCACACCGCTAGAATATCTTTTAAATGTGATCAGTGTAATAGACAATTTTCAAGGAAGGATCATTTAGATaatcatattaaaattcacaGTGAAGATAAATTATACGAATGTGACGAATGTAAGAAGCGGTTTAAACTAAAAAGTTGTTTAAATTCACATAAAAAGACGCACGCTGGTAAGAAACCGTACAGTTGTGCCGCATGTCAGAAGCGGTTTGCACGAAAAGCTCATTTGGATAAACATGAAAGGACTTACACTGAAGCCGCCGGACCGCACATCTGTGTAGAGTGTGATATGAAATTTGATAAAAAATGTGCCCTAATTAGACACCAAGTAATTCACACCGGAGAGGAATCGCTACTCTGTGAAGTCTGTAATACGGAATTCAATACAAAAGGTGCCTTAGACAAGCATAAGAAGCTTCACACCGGAGAGAATCCACTCGTCTGCGCACATTGTAATAAAGAGTTCGCTAACAAAGGCTGCTTAGACAGACATACAAAAATTCATACTGGAGTGAAACCATACAGGTGCGAAGTATGCAACAAGCAATTTTCGCGTTCAGATGATTTACGAAACCATAAAAAAACACACTCTGCAAAGAAAGCCTACAGCTGTGGAGTGTGCAACAAACAACTTTCAGATAAAAAGAGCTTGCGTAGACATAATAAAAGTCACAATGCAGACGCGAAAAAATACAACTGTGAGAAATGTGAAAAACAATTTACAGACAAAGGTACCTTTCACAGACATAAGAGAATTCACACTGGTGAAAGACCATATAGTTGTAAAGAATGTAGCAAGAAATTCACATTGAAAGGTGACTTAAATAGACACACAAGAATTCACTTGGTAGATAAAGCATACAGCTGTCGGCTGTGCAATAAACAATTTACTCAAAAATCGCATCTAAATAGTCATGAAAGAGTTCACAACGGAGAAAAACCGTACGAGTGTAATACATGTCAGGCAAAATATACCCGGAAAGCTAGTTTAATCagacatattattataaatgccCACTTCCACTGCCACACTACTGGCTAG
Protein Sequence: MDVVHSCRCCLLRAPDKDLTTPYTHLGNTEIYSDMLKECFEIHLIPGGTNECGICDVCVGRLRDASNFKLQVQRCQVELQARLKETLIIKDEEPVEVSEVVLENDTGDRVSQEDPLLKLETDLDVTSDEDLSSGPAGRQAGPSRAREQLAAAIVVPATPDDSFDVYSVESSTDTYEQEDKPKSHQCKVCDKTFVNNSVLKRHRLLHTARISFKCDQCNRQFSRKDHLDNHIKIHSEDKLYECDECKKRFKLKSCLNSHKKTHAGKKPYSCAACQKRFARKAHLDKHERTYTEAAGPHICVECDMKFDKKCALIRHQVIHTGEESLLCEVCNTEFNTKGALDKHKKLHTGENPLVCAHCNKEFANKGCLDRHTKIHTGVKPYRCEVCNKQFSRSDDLRNHKKTHSAKKAYSCGVCNKQLSDKKSLRRHNKSHNADAKKYNCEKCEKQFTDKGTFHRHKRIHTGERPYSCKECSKKFTLKGDLNRHTRIHLVDKAYSCRLCNKQFTQKSHLNSHERVHNGEKPYECNTCQAKYTRKASLIRHIIINAHFHCHTTG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -