Ebru036048.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977945.1:31277374-31280894[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00045 0.058 15.8 0.2 3 23 54 74 53 74 0.97 2 14 0.00018 0.023 17.1 0.5 1 23 80 102 80 102 0.98 3 14 0.0049 0.62 12.6 0.1 5 23 112 130 111 130 0.96 4 14 0.00018 0.023 17.1 0.5 1 23 136 158 136 158 0.98 5 14 0.0049 0.62 12.6 0.1 5 23 168 186 167 186 0.96 6 14 0.00018 0.023 17.1 0.5 1 23 192 214 192 214 0.98 7 14 0.0049 0.62 12.6 0.1 5 23 240 258 239 258 0.96 8 14 0.00018 0.023 17.1 0.5 1 23 264 286 264 286 0.98 9 14 0.0049 0.62 12.6 0.1 5 23 296 314 295 314 0.96 10 14 0.00018 0.023 17.1 0.5 1 23 320 342 320 342 0.98 11 14 0.0049 0.62 12.6 0.1 5 23 368 386 367 386 0.96 12 14 0.00018 0.023 17.1 0.5 1 23 392 414 392 414 0.98 13 14 0.0049 0.62 12.6 0.1 5 23 424 442 423 442 0.96 14 14 0.00018 0.023 17.1 0.5 1 23 448 470 448 470 0.98
Sequence Information
- Coding Sequence
- ATGCCCAAACTGGAGCTGTTTGTAGAAGAGGAAACTTATGTTCCCGAGGACTCGAAGCAAAGTGTCGAGCAGAAACCAAATATCGTTCAACACAAGGCCAGTTTTGTGGAGCCCAAGAAAAAGCCACCCAAGATCCACAGTGCCACGGGCGCCATGGCGTGCATGACGTGCGGGCGCGTGCTGGCGTCGCGCTCGGCGCTGCTCCGCCACGAGCGCACGCACTCCGGCGAGCGGCCGTACCCCTGCCCGCGCTGCCAGCGAGCCTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTCGTGCACGAGGGtaagggggggagggggggggggacgtGCGGGCGCGTGCTGGCGTCGCGCTCGGCGCTGCTCCGCCACGAGCGCACGCACTCCGGCGAGCGGCCGTACCCCTGCCCGCGCTGCCAGCGAGCCTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTCGTGCACGAGGGtaagggggggagggggggggggacgtGCGGGCGCGTGCTGGCGTCGCGCTCGGCGCTGCTCCGCCACGAGCGCACGCACTCCGGCGAGCGGCCGTACCCCTGCCCGCGCTGCCAGCGAGCCTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTCGTGCACGAGGCCTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTCGTGCACGAGGGtaagggggggagggggggggggacgtGCGGGCGCGTGCTGGCGTCGCGCTCGGCGCTGCTCCGCCACGAGCGCACGCACTCCGGCGAGCGGCCGTACCCCTGCCCGCGCTGCCAGCGAGCCTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTCGTGCACGAGGGtaagggggggagggggggggggacgtGCGGGCGCGTGCTGGCGTCGCGCTCGGCGCTGCTCCGCCACGAGCGCACGCACTCCGGCGAGCGGCCGTACCCCTGCCCGCGCTGCCAGCGAGCCTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTCGTGCACGAGGCCTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTCGTGCACGAGGGtaagggggggagggggggggggacgtGCGGGCGCGTGCTGGCGTCGCGCTCGGCGCTGCTCCGCCACGAGCGCACGCACTCCGGCGAGCGGCCGTACCCCTGCCCGCGCTGCCAGCGAGCCTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTCGTGCACGAGGGtaagggggggagggggggggggacgtGCGGGCGCGTGCTGGCGTCGCGCTCGGCGCTGCTCCGCCACGAGCGCACGCACTCCGGCGAGCGGCCGTACCCCTGCCCGCGCTGCCAGCGAGCCTTCGCGCAGAAGGAGGTCATGCACCGGCACATGCTCGTGCACGAGGGTAAGGGGGACTTAAGAGAGCGTTGGGAGGGTAAGAGAGCGTGGGAACCAACAGAAATGATCTTATCTCAGCGCGCTAAAAATTCAATTGTCATCGAATCAGAAGCGACAGTAACAGCTCATTGTAATTGTTTGTCCACAGCGGTACGTATAGAGTCCACAGCGGTGCGTCAACAATAG
- Protein Sequence
- MPKLELFVEEETYVPEDSKQSVEQKPNIVQHKASFVEPKKKPPKIHSATGAMACMTCGRVLASRSALLRHERTHSGERPYPCPRCQRAFAQKEVMHRHMLVHEGKGGRGGGTCGRVLASRSALLRHERTHSGERPYPCPRCQRAFAQKEVMHRHMLVHEGKGGRGGGTCGRVLASRSALLRHERTHSGERPYPCPRCQRAFAQKEVMHRHMLVHEAFAQKEVMHRHMLVHEGKGGRGGGTCGRVLASRSALLRHERTHSGERPYPCPRCQRAFAQKEVMHRHMLVHEGKGGRGGGTCGRVLASRSALLRHERTHSGERPYPCPRCQRAFAQKEVMHRHMLVHEAFAQKEVMHRHMLVHEGKGGRGGGTCGRVLASRSALLRHERTHSGERPYPCPRCQRAFAQKEVMHRHMLVHEGKGGRGGGTCGRVLASRSALLRHERTHSGERPYPCPRCQRAFAQKEVMHRHMLVHEGKGDLRERWEGKRAWEPTEMILSQRAKNSIVIESEATVTAHCNCLSTAVRIESTAVRQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -