Ebru060046.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_963854355.1
- Location
- OY977958.1:19551944-19561260[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.1e-06 0.00014 24.1 4.9 1 23 243 265 243 265 0.98 2 12 8.1e-05 0.01 18.2 4.3 1 23 271 293 271 293 0.99 3 12 1.2e-06 0.00015 23.9 0.9 1 23 299 321 299 321 0.96 4 12 0.00018 0.022 17.1 1.8 1 23 327 349 327 349 0.97 5 12 0.0026 0.33 13.5 6.0 1 23 357 379 357 379 0.98 6 12 0.0017 0.22 14.0 0.9 1 23 385 407 385 407 0.98 7 12 1e-05 0.0013 21.0 3.7 1 23 413 435 413 435 0.98 8 12 3.9e-05 0.0049 19.2 0.5 1 23 441 463 441 463 0.98 9 12 0.00037 0.047 16.1 2.7 1 23 472 494 472 494 0.99 10 12 7.1e-05 0.009 18.4 3.4 1 23 500 522 500 522 0.98 11 12 2.2e-06 0.00027 23.1 0.7 1 23 528 550 528 550 0.98 12 12 7.1e-07 9.1e-05 24.7 3.9 1 23 556 578 556 578 0.99
Sequence Information
- Coding Sequence
- atggaTAGCACACTTAATACCCTTAATCAAATAGACGACTTTCTTGTAGCCAATTCGGTTGAATACTCCCTTAAGATAGCTATGGTCACTCCTGTTTATAAGGGTGGGAACAGAAGCTGCACTTCAGATTATAGACCAATATCAGTCCTCCCCGCAATATCTAAAATACTTGAAAAGCTAATAAACACCAGAATAACTAGTTatctaaacaaatttaaaattttatctcCATCTCAATATGGCTTTAGGCAAGGGTTGTCCACTGAAGACGCTGTGACAGCACTTTCTTCCCTGATAGTTGATAAGGTGGACAAGAAGAAGAAATGTATTACCGTATTTCTTGACCTCAAGAAAGCCTTTGACACTGTTTCTGTTCCCACACTTGTAAACACCCTGGAGAGCATAGGTATCAGAGGAGTTCCCCTTTCTCTACTAACTAGCTACTTGAATGGACGTAAGCAACGGGTTAAAATAGGGAAATTCACTAGTGACGAATGTGACGTAACTTACGGTGTCCCTCAGGGAAGTGTTTTGGGCCCAACGCTCTTTCTCATATACATCAACCAGCTCAGCTTCTTACCCATTGACAGAGGCTCCACCTTTGCatatgctgatgatacagcTGTAGTGTTCTGGGGAGACAACTGGGAGGACGTTAGGATAACTGCCGAGAATGTGACCGTGAAGCAGGAGCCAGTCCCAGAAGGCGCCGACGAGGAAAAACCATTCCCCTGCGATAGATGTGGAAAGAAATTCAAACGTTCCAATTGTCTAAGAAGGCATATAAGAACCCACATCAACAGAAAAACATACACATGCGATATATGCAAACGGCAGTTCACGCGTTTGAATCTATTTTTTAGGCACAAACGAACCCATGTCGGCTCTAGAACACACGACTGTGAATTATGTGGGAAACAATTCCGAAGTCCGAGCGACTTGAACAGACATCTAGTAACTCATACTGACGAGAAACCATTCAAATGTGAAATATGCGAAAAACAGTTTAGGCAGCTCAATTCTTTAAATTACCATAAAGAATCCCATACGGGCGAGAGATCCCGACCGTTCTCTTGTGATCTATGTGAGAAGAAATTTACCCAATCGTGCCATGTAGCCACACATAGACGGAGTCACACAGGAGAAAAACCATATTCGTGTGAAATATGCAACATGAAGTTCGCGAGCACGAGTGCGCAGAGCAGACACAAACTAACACACACAGGCGAACGGCGACATACTTGTGAAACATGCCACAAGAATTTCGCGCGCTCAGGTGAACTTATCAGACACAGGCGGATACACACTGGAGAGAAACCATACGAATGTGACATTTGCGAGAAACGCTTCGCGCAATTAAATTACTTGATTAGCCATAAAAAGATTCATACCGGTGAAAACGGAATTAAACGGTTCACTTGCGAGATCTGCGAGATGCAGTTCGCGTTGTCGAATCATTTGAAGACGCACAAACGGACTCACACTGGAGAGAAACCATATAATTGCGATGTGTGTGACATGCAGTTCTCCCGCACGCATTCTTTGACTAAACATAAACGGATACATACCGGTGAGCGGCCGTATCCTTGTGATTTGTGTGAAAAGAATTTCAGAAGCTCTAGCGACTTGATAAGGCATAAACGGCTACATTCAGACGCAAAGCCATATACGTGCGAAGTGTGTCAGAAGTCGTTTCGTGATTCGAGCTATTTTCAGAAACATAAAAGGACTCATGACGGCGATACTACATCATAG
- Protein Sequence
- MDSTLNTLNQIDDFLVANSVEYSLKIAMVTPVYKGGNRSCTSDYRPISVLPAISKILEKLINTRITSYLNKFKILSPSQYGFRQGLSTEDAVTALSSLIVDKVDKKKKCITVFLDLKKAFDTVSVPTLVNTLESIGIRGVPLSLLTSYLNGRKQRVKIGKFTSDECDVTYGVPQGSVLGPTLFLIYINQLSFLPIDRGSTFAYADDTAVVFWGDNWEDVRITAENVTVKQEPVPEGADEEKPFPCDRCGKKFKRSNCLRRHIRTHINRKTYTCDICKRQFTRLNLFFRHKRTHVGSRTHDCELCGKQFRSPSDLNRHLVTHTDEKPFKCEICEKQFRQLNSLNYHKESHTGERSRPFSCDLCEKKFTQSCHVATHRRSHTGEKPYSCEICNMKFASTSAQSRHKLTHTGERRHTCETCHKNFARSGELIRHRRIHTGEKPYECDICEKRFAQLNYLISHKKIHTGENGIKRFTCEICEMQFALSNHLKTHKRTHTGEKPYNCDVCDMQFSRTHSLTKHKRIHTGERPYPCDLCEKNFRSSSDLIRHKRLHSDAKPYTCEVCQKSFRDSSYFQKHKRTHDGDTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -