Basic Information

Insect: Epinotia brunnichana
Gene Symbol: -
Assembly: GCA_963854355.1
Location: OY977958.1:10688362-10689792[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.0014 0.18 14.3 1.6 1 23 50 73 50 73 0.92

2 14 1 1.3e+02 5.3 1.4 1 23 98 120 98 120 0.91

3 14 9.1e-06 0.0012 21.2 4.0 2 23 131 152 130 152 0.97

4 14 0.0056 0.72 12.4 2.5 1 23 158 180 158 180 0.97

5 14 3.2e-06 0.0004 22.6 5.0 1 23 186 208 186 208 0.98

6 14 1.7e-06 0.00022 23.5 2.8 1 23 216 238 216 238 0.97

7 14 1.7e-05 0.0022 20.3 1.2 1 23 244 266 244 266 0.98

8 14 1.2e-05 0.0015 20.8 1.9 1 23 272 294 272 294 0.98

9 14 3.8e-07 4.8e-05 25.5 2.9 1 23 309 331 309 331 0.97

10 14 2.5e-06 0.00032 22.9 1.1 1 23 337 359 337 359 0.97

11 14 0.00095 0.12 14.8 1.8 1 23 365 387 365 387 0.97

12 14 6.4e-05 0.0081 18.5 3.8 1 23 393 416 393 416 0.96

13 14 7.7e-05 0.0098 18.3 3.6 1 23 422 444 422 444 0.96

14 14 8.2e-07 0.0001 24.5 1.3 1 23 450 472 450 472 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.0014	0.18	14.3	1.6	1	23	50	73	50	73	0.92
2	14	1	1.3e+02	5.3	1.4	1	23	98	120	98	120	0.91
3	14	9.1e-06	0.0012	21.2	4.0	2	23	131	152	130	152	0.97
4	14	0.0056	0.72	12.4	2.5	1	23	158	180	158	180	0.97
5	14	3.2e-06	0.0004	22.6	5.0	1	23	186	208	186	208	0.98
6	14	1.7e-06	0.00022	23.5	2.8	1	23	216	238	216	238	0.97
7	14	1.7e-05	0.0022	20.3	1.2	1	23	244	266	244	266	0.98
8	14	1.2e-05	0.0015	20.8	1.9	1	23	272	294	272	294	0.98
9	14	3.8e-07	4.8e-05	25.5	2.9	1	23	309	331	309	331	0.97
10	14	2.5e-06	0.00032	22.9	1.1	1	23	337	359	337	359	0.97
11	14	0.00095	0.12	14.8	1.8	1	23	365	387	365	387	0.97
12	14	6.4e-05	0.0081	18.5	3.8	1	23	393	416	393	416	0.96
13	14	7.7e-05	0.0098	18.3	3.6	1	23	422	444	422	444	0.96
14	14	8.2e-07	0.0001	24.5	1.3	1	23	450	472	450	472	0.98

Sequence Information

Coding Sequence: ATGGGGACCAGAACCCAATCACAAAAGGCTTGTTCCCAGCACGACCTGAGACGTATTCGGCTGATGCTGAACTTTTTTTCAGAGTTATTATTCAGCGCTACATCGACTGCCGCGCTCAAACCGATCGAGACCGGCGGCATGCCGCCGTACAACTGCCGCGCGTGTCACAAACAATTCGACCAAGAGGAGAGTCTCACCAGACACATGTTCGCTATCCACGCTAAACACGAACTACAATCTAAGGTCGAAGTAAACGAGGATCCTATCGAAGCCCCTACCAAGAAAAAAATACACCCATGTGAAGTCTGCTGTCAGTGGTTCACACTAAAAACTGACCTGGAACAGCATATGGAGGTTCACAAGGTGATACCCAATGAGAACGACGATTTGACCTGCGAAACGTGCCAAAGACAATTTTCGGACCGATCCCATCTGAACAGACACCAGCAATCACATGGGACACGAGACAATTACAATTGCGAATTGTGCGCAAAGCATTTTAAAAGTTATAACGGTTTGAAGATGCATAAGATGATACATACTGGTGAGAAGCCTTACCAATGCCAAGTGTGCCAGAAGCAATTCAGGCATAAAAGCCACTTGACTGCTCACCAAGAAATTCACATGGAGAACAGGCAATATAAGTTCTTCTGTTCGGTGTGCAAGAAAAAGTTTGCACAAAAATCCTCCTTGAAGCTTCATATGCGTTTACATACGGGAGAAAAACCTTATACCTGTGACATATGTAGCAAACCATTCGCTTTTAGGTCCACGTTGAATGCCCACAAGCGTTTCCACACAGGAGAGAAACCGTACACGTGTGAAGTATGCCGGAAGCAATTCACTCTAAAAAGTTCTTTGAACAAGCATCTACTTTCCCATGCGGATGTTCTTGATTTACCATCTGCTGCGACCGATGAATCTTACTGTTGCGAAATATGTGGAAAGCGATTTAGACAAAAAAGCTATTTGGCCAGACATCTGAAGGCTCACATGGGAATCAAGCCGTATTTCTGTGAAATATGCAACAAACGATTTGGCCAAAAAGGCAACTTGAGAGCTCACAAGAAGATCCACACTGGAGAGAAGTCTTTCGCCTGCGAAATATGTCGTAAGCGATTTGGTACGAAAGCTAATTGCAAGAACCACATGATCATACACACTGGGCAGAAACCACACTCGTGTAAAATATGCAATAAGCAATTTTCGTATAAATGCGCATTGAACGTTCATATCAAAGTTATTCACTTCAGAGAAAAACCACATATATGCCATATATGCAAAAGGTCATTTGCGTTGTTGTCTACCTTGAAAAAGCATATATTGAGTCACACTGGAGAGCGGCCTTTCTCATGCCATGTCTGCGGCAAAGCTTTCACAGTGAAGTACGGCTTGAAAAAGCACTTGTTAATCCACAACAGGCACCATTAG
Protein Sequence: MGTRTQSQKACSQHDLRRIRLMLNFFSELLFSATSTAALKPIETGGMPPYNCRACHKQFDQEESLTRHMFAIHAKHELQSKVEVNEDPIEAPTKKKIHPCEVCCQWFTLKTDLEQHMEVHKVIPNENDDLTCETCQRQFSDRSHLNRHQQSHGTRDNYNCELCAKHFKSYNGLKMHKMIHTGEKPYQCQVCQKQFRHKSHLTAHQEIHMENRQYKFFCSVCKKKFAQKSSLKLHMRLHTGEKPYTCDICSKPFAFRSTLNAHKRFHTGEKPYTCEVCRKQFTLKSSLNKHLLSHADVLDLPSAATDESYCCEICGKRFRQKSYLARHLKAHMGIKPYFCEICNKRFGQKGNLRAHKKIHTGEKSFACEICRKRFGTKANCKNHMIIHTGQKPHSCKICNKQFSYKCALNVHIKVIHFREKPHICHICKRSFALLSTLKKHILSHTGERPFSCHVCGKAFTVKYGLKKHLLIHNRHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00654508;
90% Identity: iTF_00654508;
80% Identity: -