Ebru067640.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- -
- Assembly
- GCA_963854355.1
- Location
- OY977963.1:17146342-17159533[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00033 0.043 16.3 0.1 1 19 157 176 157 179 0.94 2 13 6.2e-05 0.008 18.5 1.3 1 23 199 221 199 221 0.99 3 13 9e-06 0.0012 21.2 0.9 1 23 227 249 227 249 0.98 4 13 1e-05 0.0013 21.0 0.5 3 23 257 277 255 277 0.96 5 13 4.7e-05 0.0059 18.9 0.2 1 23 283 305 283 305 0.98 6 13 0.017 2.2 10.9 1.9 2 23 311 332 311 332 0.95 7 13 1.6e-07 2.1e-05 26.7 0.9 1 23 337 359 337 359 0.98 8 13 0.0004 0.051 16.0 0.1 1 23 365 387 365 387 0.98 9 13 4e-05 0.0051 19.1 1.0 1 23 393 415 393 415 0.97 10 13 1.1e-06 0.00014 24.0 0.4 1 23 421 443 421 443 0.97 11 13 0.00085 0.11 15.0 0.2 1 23 449 471 449 471 0.98 12 13 1.3e-05 0.0016 20.7 6.9 1 23 477 499 477 499 0.96 13 13 9.2e-06 0.0012 21.2 0.3 1 23 505 528 505 528 0.97
Sequence Information
- Coding Sequence
- ATGTCGGTGGAAGAGCATGTGTACGAGACGGAATATTTAAAGTTAATGGTGCACGTCAAGGAGGAACGAGATTCTGAAAGCGTTCCCTCCTCTGATCCAATATCTGTGAAGCGGGAGCCAGACTGTGATGAACAGCCACCAATGAACCAGCCAACATGTCAGCCAGATCTAAAGCAGCCAATGATACAAGAGTCGCACGCAGAACAATCAAATGTGAACCCGGAGGAGTGTGCACAGCAGACAAGTGTGTGTGTGAAAGTGGAGCCTTTGTGGGCCACGGCCGATGACCAGGAGTTCCAATATGAGGTGCCGCTGGAGCCGGTCTGTGTACTAGGGGAGCAGGAAGAACCCGGCCCCTCCTGGCCTCTGGTGCCCGACACACACTGCGAGGCCGACATTACACACCGCGAGGCCCACTACACGGGCGCCGAAAACACCGTCCCACTTCAAGAAACTGCTGAGAATAACTATGTCTGCGACGTCACTTGCGGCAAAACTTTTGAGCAGAAACACGATCTTATCCTCCACGCCGACGTCTGTCAGTCTGCGGCAAAGAGAACATTCCGTGGACCCGGCCTTAAGACTAAGACAACATACACCTGCGATGTATGTAATAAGGATTTTAATGTATTGAGTCGTTTAAAGATTCACAAACGGACCCACACTGGACAAAGGCCCTATGCCTGTGAAATATGTCACGGAAATTTTAAAACACTAGGCAATTTAAAGGAGCATATACGCACCCACACTGGAGAAAAGCCTTATGGTTGTGATATATGTAATAAGAGATTTTCGCAGCAGAGCGCGTTAAATATACATAAGCAACTCCACACTGGCCAAAAACCGTACAGTTGCGAGATCTGTAATAAACAGTTCGCGGTGTTGCCTGGCTTGAAAAAACATTTACTAACCCATTCTGCTGTAAAACCTCAATGCGAGATATGTCATAAGCAGTTTAATAATTCGAATATCTTAAATGAACATCGACTACTTCACACTGGCGAACTATATCCCTGCGATATATGTAAGAAAATGTTTGCTACACTTGGTTATTTAAAGAAACATATGAGACGTCACACAGATGAGAAAGCCTACCCTTGTGGAGTGTGTaacaaaacgttaggctctctGGGGGCTTTAAAGAAACACACACGGTTACACACGGGAGATAACCCCTTCCGCTGTGATATATGTAATAAACAGTTTTCATATTTAACTCTCCTTAATGAACATCAACTACTCCACACTGGTGAAACCCCATATGCCTGCGAGATATGTTCGAAAATGTTCGCTACAccgacttatttaaaaaaacatatggCACGTCACACCGATGACAAATCCTATCCTTGTGAAGTGTGTAGTAAAAAGTTAGGCTCGCTTGGGGCTTTACAGAAACACAAACGGTCGCACACTGGTGAAAAACCACATGCCTGCCATATATGTTCAAAGCGGTTCACGCAATCGAATCATTTAAGAACACATATACGAGTGCACACCGGAGAGAAACCCTTCGCCTGCGATATATGTAATGTGAGTTTTGCAAAAAAGAGTAATGTAACTGCACACAGACGCACTATACATAAGGTAGCCTAG
- Protein Sequence
- MSVEEHVYETEYLKLMVHVKEERDSESVPSSDPISVKREPDCDEQPPMNQPTCQPDLKQPMIQESHAEQSNVNPEECAQQTSVCVKVEPLWATADDQEFQYEVPLEPVCVLGEQEEPGPSWPLVPDTHCEADITHREAHYTGAENTVPLQETAENNYVCDVTCGKTFEQKHDLILHADVCQSAAKRTFRGPGLKTKTTYTCDVCNKDFNVLSRLKIHKRTHTGQRPYACEICHGNFKTLGNLKEHIRTHTGEKPYGCDICNKRFSQQSALNIHKQLHTGQKPYSCEICNKQFAVLPGLKKHLLTHSAVKPQCEICHKQFNNSNILNEHRLLHTGELYPCDICKKMFATLGYLKKHMRRHTDEKAYPCGVCNKTLGSLGALKKHTRLHTGDNPFRCDICNKQFSYLTLLNEHQLLHTGETPYACEICSKMFATPTYLKKHMARHTDDKSYPCEVCSKKLGSLGALQKHKRSHTGEKPHACHICSKRFTQSNHLRTHIRVHTGEKPFACDICNVSFAKKSNVTAHRRTIHKVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -