Ebru018842.1
Basic Information
- Insect
- Epinotia brunnichana
- Gene Symbol
- chinmo
- Assembly
- GCA_963854355.1
- Location
- OY977939.1:6624238-6633859[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0022 0.28 13.7 0.3 2 23 331 353 330 353 0.96 2 22 0.00011 0.014 17.8 1.2 2 23 359 381 358 381 0.95 3 22 0.00011 0.014 17.8 1.2 2 23 410 432 409 432 0.95 4 22 0.00011 0.014 17.8 1.2 2 23 461 483 460 483 0.95 5 22 0.00011 0.014 17.8 1.2 2 23 512 534 511 534 0.95 6 22 0.00011 0.014 17.8 1.2 2 23 563 585 562 585 0.95 7 22 0.00011 0.014 17.8 1.2 2 23 614 636 613 636 0.95 8 22 0.00011 0.014 17.8 1.2 2 23 665 687 664 687 0.95 9 22 0.00011 0.014 17.8 1.2 2 23 716 738 715 738 0.95 10 22 0.00011 0.014 17.8 1.2 2 23 767 789 766 789 0.95 11 22 0.00011 0.014 17.8 1.2 2 23 818 840 817 840 0.95 12 22 0.00011 0.014 17.8 1.2 2 23 869 891 868 891 0.95 13 22 0.00011 0.014 17.8 1.2 2 23 920 942 919 942 0.95 14 22 0.00011 0.014 17.8 1.2 2 23 971 993 970 993 0.95 15 22 0.00011 0.014 17.8 1.2 2 23 1022 1044 1021 1044 0.95 16 22 0.00011 0.014 17.8 1.2 2 23 1073 1095 1072 1095 0.95 17 22 0.00011 0.014 17.8 1.2 2 23 1124 1146 1123 1146 0.95 18 22 0.00011 0.014 17.8 1.2 2 23 1175 1197 1174 1197 0.95 19 22 0.00011 0.014 17.8 1.2 2 23 1226 1248 1225 1248 0.95 20 22 0.00011 0.014 17.8 1.2 2 23 1277 1299 1276 1299 0.95 21 22 0.00011 0.014 17.8 1.2 2 23 1328 1350 1327 1350 0.95 22 22 0.00011 0.014 17.8 1.2 2 23 1379 1401 1378 1401 0.95
Sequence Information
- Coding Sequence
- ATGATGAAAAGTGCTATTGAGAATCCTCACAACTTAACCTCCCTCTCCATCTTTCCAGGTCGCCAGTTCAAGGCACACAAGGTGATCCTAGCGGCGTGCAGCAAGCACTTTCAGGAGTTGTTCGACACCGCCCCGCCCAGCCATGCGGGTGCCTGCTACGTCATCCTCGAGGCCACCACGGCAGACAACATGCAGGCGCTGCTCGAGTTTATGTACAAGGGCGAGGTGCACGTCAGCCAAGACGCGCTCTCCAGCTTCCTTAAGAGCGGAGAGAATTTACAGGTCAAAGGTCTCTCAATGGAGATGTCACAGGACGCATGGGTGAAGCAACAGACGCAGCAATCCGCCGGGGCCCACCAGGCTCGCATAAAGACGAGCCCGGTGTCCGGAGGCAACTGTGAGGGTCAGGAGGCGCCGCAGTCGCACACGTCGTTCGCGCCGATCATGCCCGGGTACGGGCTGCCCTTACATGGTGGAGCTGCTGGGATGGGCCGCTACGCGCCGCCGGCGCACGTGCCGTTACATCCCACGCCGCATCGAAGACCCGCGCCGCCTAAAGCCTCGCCGTCTCAGAGTCCGCATGCTAGGAATTACAGACAAAGCTCATCATCCTCGCACTGCGGCAGCGTGGCGGAGGAGCCGGACACGCGATCCTCCCCGGGCGCCGGCACACGGTACGACGAAACGCCGGACTGCGCCCAACTCAACACCATCAAAAACAACGGCTACGAACGGACGGGTAATGACGAGATGATGGAGCGACGCGACACTGAACAGGGGGCTGAAGATCTACGGGTAAAGAATGAGAACGAGTTCCACACGAGTGGGTACAACAACACGTCGCCGCCGGCGGCCACAATGCCGCCCAACTATCACGACAAGCCGATCACTACCTCGCCCGTGCCCAAGCCTGCCGCCGACATGACGTGGCCCACCAAGCTCATCACAAGCAAGTCCGGCGGCATCGCCACTGCTGACGGCAAGAAACTAAAGTGTCCGTACTGCGAGCGGCTGTACGGGTACGAGACGAACCTGCGCGCGCACATCCGCCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGTGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGTGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGTGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGTGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGATCATTCTCAATTCCAGGCAAGAAACTAAAGTGGCCGTACTGCGAGACCAGCGGCACCAGGGCATCCGCGTGCCGTGTCCGCACTGCTCGCGCACGTTCACGCGCAACAACACCGTGCGCCGGCACATCGCGCGCGAGCACCGCCACCAGGTGACACCGCACCTGCCGCAAGGCCCACTGCCCAACCACGCGCAGTAA
- Protein Sequence
- MMKSAIENPHNLTSLSIFPGRQFKAHKVILAACSKHFQELFDTAPPSHAGACYVILEATTADNMQALLEFMYKGEVHVSQDALSSFLKSGENLQVKGLSMEMSQDAWVKQQTQQSAGAHQARIKTSPVSGGNCEGQEAPQSHTSFAPIMPGYGLPLHGGAAGMGRYAPPAHVPLHPTPHRRPAPPKASPSQSPHARNYRQSSSSSHCGSVAEEPDTRSSPGAGTRYDETPDCAQLNTIKNNGYERTGNDEMMERRDTEQGAEDLRVKNENEFHTSGYNNTSPPAATMPPNYHDKPITTSPVPKPAADMTWPTKLITSKSGGIATADGKKLKCPYCERLYGYETNLRAHIRQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQWHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQWHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQWHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQWHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVIILNSRQETKVAVLRDQRHQGIRVPCPHCSRTFTRNNTVRRHIAREHRHQVTPHLPQGPLPNHAQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00657369;
- 90% Identity
- iTF_00657369;
- 80% Identity
- iTF_00657369;