Ebru060291.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Epinotia brunnichana
Gene Symbol
-
Assembly
GCA_963854355.1
Location
OY977958.1:21948320-21962813[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 2.9e-05 0.0036 19.6 0.5 1 23 128 150 128 150 0.99
2 25 0.0046 0.59 12.7 4.4 1 23 176 197 176 197 0.97
3 25 0.00021 0.027 16.9 0.4 1 23 203 225 203 225 0.99
4 25 3.5e-05 0.0045 19.3 1.7 1 23 231 253 231 253 0.98
5 25 2.9e-06 0.00037 22.7 4.5 1 23 259 281 259 281 0.99
6 25 2.9e-06 0.00037 22.7 2.1 1 23 287 309 287 309 0.99
7 25 6.6 8.4e+02 2.7 1.0 8 20 350 362 345 363 0.92
8 25 0.013 1.7 11.2 3.0 1 23 506 527 506 527 0.96
9 25 0.0011 0.14 14.6 0.7 1 23 533 555 533 555 0.99
10 25 0.00023 0.03 16.8 1.6 1 23 561 583 561 583 0.97
11 25 4.1e-05 0.0052 19.1 2.6 1 23 589 611 589 611 0.99
12 25 4.6e-06 0.00058 22.1 1.7 1 23 617 639 617 639 0.98
13 25 0.0027 0.34 13.4 5.1 1 20 670 689 670 691 0.94
14 25 9.7e-07 0.00012 24.2 0.5 1 23 832 854 832 854 0.99
15 25 0.014 1.8 11.1 0.2 1 23 860 883 860 883 0.91
16 25 1.2e-05 0.0016 20.8 1.4 1 23 889 911 889 911 0.96
17 25 0.0044 0.56 12.7 4.3 1 23 917 939 917 939 0.98
18 25 0.0017 0.22 14.0 1.9 1 23 945 968 945 968 0.97
19 25 2.2e-05 0.0028 20.0 1.9 1 23 974 996 974 996 0.98
20 25 0.0015 0.19 14.2 0.3 1 23 1002 1025 1002 1025 0.93
21 25 2.1e-05 0.0027 20.0 2.1 1 23 1032 1054 1032 1054 0.98
22 25 0.0001 0.013 17.9 0.8 1 23 1060 1083 1060 1083 0.97
23 25 4.6e-05 0.0058 19.0 1.4 1 23 1090 1112 1090 1112 0.98
24 25 4.8e-05 0.0061 18.9 0.8 1 23 1118 1140 1118 1140 0.97
25 25 0.0011 0.14 14.6 0.6 1 23 1146 1169 1146 1169 0.97

Sequence Information

Coding Sequence
ATGACGTTTATTCAATTGGGTGCTTTAAATGTTCATGAACTCATTCACGCGGAAGAAAAAAGCGCGCGGGGCGAGTTGTACGCGCGGGGCGAGTTGTACGCGCCGGGCGAGTTGTACGCGCAGGTGACTAAGGACGAGCGTGTGCTTTGGCCAGGACGTACGCAGCGTCCCAACAAAGTCAATGGCCTTGGCGaaaaatCGCAGCCCGTGGTTTGTGAGTACAGGCCTGCGCTCGAGCGCTGCGCCGTCACAACCCGCGAGCCCGCCGCGACCGCGGCCGCTGCACACCAACACCATGATACCACCACAGATGATACACTCGACACCGCACCACTACATACAGGCACCGACACCCTCCGACACACCGCGGAGACAAACACCTACAAGTGCGACACTTGCGGacaaatatttatacaaaaacaaTATCTAATCAACCATGTTAAAGTGCATCTTCGGGAAGCATCAGAAACATTACCGAATGAGTCTTTAATCATCCGCGAGCCCAGTGACACGAGTGTAAAGAAATATTCCtgcaaaatatgtaaaaaaaagttcCGAAAGAATTACTTGAAAATTCACGAGCGGTTTCACACAGGAGAGAAACCTTACACCTGTGAAGTGTGTAAGAAGCAGTTTGCTGTTTTGGGCAGTTTGAGAGAACATAAACGAATCCACACTGAAGAAAGGCCGTATTCATGTGAAGTATGTGGAAAGAGTTTCAGGGCATTGAACCATTTAAAAATGCACGAACGCAGTCACACTGGACAAAAACCATACAAGTGCGAAACATGTAAAAAGGGATTCTCGCAATCATGTAATTTACAATCACATATACGAACACACACGGGAGAAAAACCTTATCGGTGCACGATGTGTGACAAGCAGTTCACGCAGTGGAGGGCTCTCAATAATCATAAAAGGTCACACACAGGCGAAAAAACATATCCGTGTGATAtaagtaaaaataaagttaaacaaCTGGGGACTTTAAATGTCCATAATATTGTACACACGATTGAAAAGCCGTTTTCGTGCGAAACGTCTAAAAAGACTTTCAGAAAAAACAGCAgtttcgaaaaacataaacatgatgcAGTCAGCGTGAAGGAAAAGTCCGAGATTGAGAGCAGTGCAGACCCATGTGGAGCGAGCGAGACGCAGTCGAAGGAAGAACCTAAATGTGAGAGCAGTGCAGACCTATGCGGAGCGAGCGAGACGCAGTTGAAGGAAGAACCTAAATGTGAGTGCAGTGCAGACCCATGCGGACCGAGCGAGACGCAGTCGAAGGAAGAACCTAAATGTGAGAGCAGTGCCGACTCATGCCGAGTGAGCGAGACGGATGCAAGCGTCGACTTCGTGATTAAGGACGAGCTGGAGCTGGGACCGGAGGGCGTCGTGCCTCGGGaaaaatCTGTGGCTTGTGAGTACGGGCCTGCGCTCGAGCGCTGCGCCGCCGCAGGCCCCCGCGAGCCCGCCGGGCCCACGGGCGATCCCAGTGAAACGAGTGTAAATAAATATGCCTGCagattttgtaataaaatgttcCGGAAGGATTACTTGAAAATTCACGAGCGGTTTCATACAGGGGAGAAACCTTACACCTGCGAAGTATGTACGAAGCAGTTCGCTCTTTTAAACAGTTTGAGAGACCATAAACGAATCCACACTGGAGAAAGGCCGTATTCATGTGATATTTGTGCAAAGACTTTCACTTTATCGAGCACTTTAAAAACACACAAAAGTAGTCACACAGGAGAAAAACCATACAAATGCGAAACATGTAAAAAGGGGTTCACGCTGTTAACTAATTTACGATCACACTTACGAAAACACACAGGAGAAACCCCTTATTCCTGCATGATGTGTGACAAGAAGTTCACGCAGTGGAGCGCTCTCAATAACCATAAAAAGTCACACACAGTTGAAAATCTTTACTCGTGCGACACAAGTAAAGAGAAGTTTAAACAACCGGGTGCTTTAAATGTTCATAAAACTAATGAAAAGCCGTTCTCGTGCGAAACGTGTAAGAAGACTTTcagaaaaaaaagtagtttcgaaaaacataaacatcAGGCAGTCAGCGTGAAGGAGAAGTCCGATAGTGAGAGCAGTACAGACTCATGCGGAACGAGCGAGACGCATGCGAAGGAAGAACCTAAATGTGAGAGCAGTGCAGACCCATGCGGAGCGAGCGAGACGCAGTCGAAGGAAGAACCTAAATGTGAGAGCAGTGCCGACTCATGCCGAGTGAGCGAGACGGATGCAAGCGTCGACTTCGTGATTAAGGACGAGCTGGAGCTGGGACCGGAGGGCGTCGTGCCTCGGGCCGCTACGCCGCGCTGCTCGCTCCCCGCGACCGCGAGCGCCCGACAACCCGCGCCGCCGCGGGACACCAGCACGACACACGACAACACTCGGCCGGGGACCAAGGGGACACATGGCGTCACACTAAACCATTCCACCACCGACAAACAGGTGACGACCAAAAGGCCATACACCTGCGACATATGTACAAAAGCCTTCACGCAGTGGGGTAGCCTGAACACTCACAAACGAATACACACAGGCGAAAAACCATACACATGTGCAGTATGTAATAAAAAGTTTAGGGCACTCGCGGCTTTTAATAATCATAAAATAGCAATGCATACACACATCAAACCTTACACCTGTGAGATATGTAATAAAAGCTTCAAGCGATTAACAAGCTTGAAATCTCATAGCGCAATGCACACGGCAGGCAAACCATACTCCTGTGATATATGTAAAAAACAGTTCCGTTGCAAGAGTTCTTTGAGGGTACACAACCGAATACACATGGGAGTGAAGCCGTATTCCTGTGAAATATGTAAAAAACAGTTCAGGGTAAAATGCAGTGTGCAGGCGCATATAATCAAAATGCACACAGGAAAAAAGCCATTCTCCTGCGAaatatgtaacaaacaattcTGTCAGAAGGGTGCTTTGAAGGCACATAACCGAGTACACACGGGAGAAAAGCCGTATTCGTGTGAAATATGTAAACAACAGTTCAGTCGGAAGGACGTTATGCAGGCACATATAATCGACAAGCACACAGGAGGAAAGAAGCCATTCTCCTGCGAAATATGTAAAAAAGATTTTTGTCAGAAGAGTGCTTTGAATGCACATAACCGAGTACACACGGGACTAAAGCCGTATTCGTGTGAAATATGTAAACAACGGTTCAGTCGGAAGGACGTTATGCAGGCACATATGATCAAGAATCATACTGGAGGAAAGTTGCCTTTCTCTTGCGAAATATGTAAAAAAGAATTTTGTCAGAGGGGTGCTTTGAATGCACATAACCGAGTACACACGGGTGAAAAACCGTATGCTTGTGAAATATGTAAAAAAGATTTTTGTCAGAAGGGTGCTTTGAATGCACATAACCGAGTACACACGGGAGAAAAACCGTATTCCTGTGAAATATGTAAACAGCAGTTCAGTCGCAACGAAGCTAAGGAGAGACACCTAATCCGCGAGCACACATGA
Protein Sequence
MTFIQLGALNVHELIHAEEKSARGELYARGELYAPGELYAQVTKDERVLWPGRTQRPNKVNGLGEKSQPVVCEYRPALERCAVTTREPAATAAAAHQHHDTTTDDTLDTAPLHTGTDTLRHTAETNTYKCDTCGQIFIQKQYLINHVKVHLREASETLPNESLIIREPSDTSVKKYSCKICKKKFRKNYLKIHERFHTGEKPYTCEVCKKQFAVLGSLREHKRIHTEERPYSCEVCGKSFRALNHLKMHERSHTGQKPYKCETCKKGFSQSCNLQSHIRTHTGEKPYRCTMCDKQFTQWRALNNHKRSHTGEKTYPCDISKNKVKQLGTLNVHNIVHTIEKPFSCETSKKTFRKNSSFEKHKHDAVSVKEKSEIESSADPCGASETQSKEEPKCESSADLCGASETQLKEEPKCECSADPCGPSETQSKEEPKCESSADSCRVSETDASVDFVIKDELELGPEGVVPREKSVACEYGPALERCAAAGPREPAGPTGDPSETSVNKYACRFCNKMFRKDYLKIHERFHTGEKPYTCEVCTKQFALLNSLRDHKRIHTGERPYSCDICAKTFTLSSTLKTHKSSHTGEKPYKCETCKKGFTLLTNLRSHLRKHTGETPYSCMMCDKKFTQWSALNNHKKSHTVENLYSCDTSKEKFKQPGALNVHKTNEKPFSCETCKKTFRKKSSFEKHKHQAVSVKEKSDSESSTDSCGTSETHAKEEPKCESSADPCGASETQSKEEPKCESSADSCRVSETDASVDFVIKDELELGPEGVVPRAATPRCSLPATASARQPAPPRDTSTTHDNTRPGTKGTHGVTLNHSTTDKQVTTKRPYTCDICTKAFTQWGSLNTHKRIHTGEKPYTCAVCNKKFRALAAFNNHKIAMHTHIKPYTCEICNKSFKRLTSLKSHSAMHTAGKPYSCDICKKQFRCKSSLRVHNRIHMGVKPYSCEICKKQFRVKCSVQAHIIKMHTGKKPFSCEICNKQFCQKGALKAHNRVHTGEKPYSCEICKQQFSRKDVMQAHIIDKHTGGKKPFSCEICKKDFCQKSALNAHNRVHTGLKPYSCEICKQRFSRKDVMQAHMIKNHTGGKLPFSCEICKKEFCQRGALNAHNRVHTGEKPYACEICKKDFCQKGALNAHNRVHTGEKPYSCEICKQQFSRNEAKERHLIREHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-