Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.9e-05 0.069 15.2 0.1 18 43 21 43 12 44 0.93

2 5 0.041 74 5.5 0.2 33 43 67 77 64 78 0.91

3 5 0.041 74 5.5 0.2 33 43 101 111 98 112 0.91

4 5 0.041 74 5.5 0.2 33 43 135 145 132 146 0.91

5 5 0.041 74 5.5 0.2 33 43 169 179 166 180 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.9e-05	0.069	15.2	0.1	18	43	21	43	12	44	0.93
2	5	0.041	74	5.5	0.2	33	43	67	77	64	78	0.91
3	5	0.041	74	5.5	0.2	33	43	101	111	98	112	0.91
4	5	0.041	74	5.5	0.2	33	43	135	145	132	146	0.91
5	5	0.041	74	5.5	0.2	33	43	169	179	166	180	0.91

Coding Sequence: ATGGGGGTTTTCAGAACGCCACCAGCTGGCAGCACTGTGGCGAGAGGTGAACGCCCGTTCGTCTGCGGGCTGTGCAACAAAGGTTTCAACGTGAAGTCCAACCTGCTGCGGCACCTGCGCACGCTGCAcgaccagatcatcagtcccgCGCTCGTCGAGGGCGAGGAGGCCGAGGACGAGCCGCCGGGGCCGAGCGAGTCCAACCTGCTGCGGCACCTGCGCACGCTGCAcgaccagatcatcagtcccgCGCTCGTCGAGGGCGAGGAGGCCGAGGACGAGCCGCCGGGGCCGAGCGAGTCCAACCTGCTGCGGCACCTGCGCACGCTGCAcgaccagatcatcagtcccgCGCTCGTCGAGGGCGAGGAGGCCGAGGACGAGCCGCCGGGGCCGAGCGAGTCCAACCTGCTGCGGCACCTGCGCACGCTGCAcgaccagatcatcagtcccgCGCTCGTCGAGGGCGAGGAGGCCGAGGACGAGCCGCCGGGGCCGAGCGAGTCCAACCTGCTGCGGCACCTGCGCACGCTGCAcgaccagatcatcagtcccgCGCTCGTCGAGGGCGAGGAGGCCGAGGACGAGCCGCCGGGGCCGAGCGAGGTGAGGCCCACTATTGTACCACCAGATAACCTAGGTGAACGTCTGCGGGCTGTGCAACAAAGGTTTCAACGTGAAGTCCAACCTGCTGCGGCACCTGCGCACGCTGCAcgaccagatcatcagtcccgCGCTCGTCGAGGGCGAGGAGGCCGAGGACGAGCCGCCGGGGCCGAGCGAGATGAAGCGCGAGTCCTGAGGAAGCGGGGGggcggggcggcgcgggcgccgcggcGCGTTGCCGCGCAAGCAGAGCTACTCGCTGTTCCTCAAGCAGCGGGCCGTGCTCTTCTCCGCCAAGAAGTGGAAGCAGTGAGGGGACGTTACCATTACACTACACTACACCACACCCGACACCCGGTGTCCGAGTACCTACACCACACACAACACAACTAG
Protein Sequence: MGVFRTPPAGSTVARGERPFVCGLCNKGFNVKSNLLRHLRTLHDQIISPALVEGEEAEDEPPGPSESNLLRHLRTLHDQIISPALVEGEEAEDEPPGPSESNLLRHLRTLHDQIISPALVEGEEAEDEPPGPSESNLLRHLRTLHDQIISPALVEGEEAEDEPPGPSESNLLRHLRTLHDQIISPALVEGEEAEDEPPGPSEVRPTIVPPDNLGERLRAVQQRFQREVQPAAAPAHAARPDHQSRARRGRGGRGRAAGAERDEARVLRKRGGGAARAPRRVAAQAELLAVPQAAGRALLRQEVEAVRGRYHYTTLHHTRHPVSEYLHHTQHN

Sequence clustering based on sequence similarity using MMseqs2