Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 2 2e+03 0.6 0.0 7 14 2 9 1 11 0.89

2 10 0.2 1.9e+02 3.8 0.0 5 15 15 25 14 27 0.89

3 10 0.96 9.4e+02 1.6 0.0 4 15 40 51 37 52 0.84

4 10 0.23 2.2e+02 3.6 0.0 5 15 54 64 53 65 0.89

5 10 1.1 1.1e+03 1.4 0.0 5 15 67 77 66 78 0.89

6 10 3.2 3.1e+03 -0.0 0.0 5 14 80 89 79 91 0.82

7 10 0.16 1.6e+02 4.1 0.0 5 15 93 103 92 104 0.90

8 10 0.65 6.3e+02 2.2 0.0 5 15 106 116 105 117 0.89

9 10 0.23 2.2e+02 3.6 0.0 5 15 119 129 118 130 0.89

10 10 0.43 4.2e+02 2.8 0.0 5 16 132 143 131 152 0.82

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	2	2e+03	0.6	7	14	2	9	1	11	0.89
2	10	0.2	1.9e+02	3.8	5	15	15	25	14	27	0.89
3	10	0.96	9.4e+02	1.6	4	15	40	51	37	52	0.84
4	10	0.23	2.2e+02	3.6	5	15	54	64	53	65	0.89
5	10	1.1	1.1e+03	1.4	5	15	67	77	66	78	0.89
6	10	3.2	3.1e+03	-0.0	5	14	80	89	79	91	0.82
7	10	0.16	1.6e+02	4.1	5	15	93	103	92	104	0.90
8	10	0.65	6.3e+02	2.2	5	15	106	116	105	117	0.89
9	10	0.23	2.2e+02	3.6	5	15	119	129	118	130	0.89
10	10	0.43	4.2e+02	2.8	5	16	132	143	131	152	0.82

Coding Sequence: ATGGAAGCAATTCGTGCTGTCCAAAATGACGTGCCAGTGCCACTAATAGAAGCAATTCGTGCTGTCCAAAATGAGGTGCTACGAATAGAAACGATTCGTGCTGTCCAAAATGAGGGGCCACTAATAGAAGCGATTCGTGATATCCAAAATGAGGTGCCACTAATAGAAGCAATTCGTGCTGTCCAAAATGAGGTCCCACTAATAGAAGCAATTCGTTCTATCCAAAATGAGGTGCCAATAATAGAAGCAATTCGTGCTGTCCACAATGAGGTCCCACTAACAGAAGCAATTCGTGCTGTCCAAAATGAGGTGCCACTAATAGAAGCAATTCGTTCTGTCCAAAATGAGGTCCCACTAATAGAAGCAATTCGTGCTGTCCAAAATGAGGTGCCACTAATAGAAGCAATTCGTGCTGTCCAAAAAGCCCAGACGATCACGATCGTCAGATTCTCCAGTCATAAAGGAACAACTACAGATTGA
Protein Sequence: MEAIRAVQNDVPVPLIEAIRAVQNEVLRIETIRAVQNEGPLIEAIRDIQNEVPLIEAIRAVQNEVPLIEAIRSIQNEVPIIEAIRAVHNEVPLTEAIRAVQNEVPLIEAIRSVQNEVPLIEAIRAVQNEVPLIEAIRAVQKAQTITIVRFSSHKGTTTD

Sequence clustering based on sequence similarity using MMseqs2